Literature DB >> 17047758

Toward an integrated computational approach to CW-ESR spectra of free radicals.

Vincenzo Barone1, Antonino Polimeno.   

Abstract

Interpretation of structural properties and dynamic behaviour of molecules in solution is of fundamental importance to understand their stability, chemical reactivity and catalytic action. Information can be gained, in principle, by a variety of spectroscopic techniques, magnetic as well as optical. In particular, continuous wave electron spin resonance (CW-ESR) measurements are highly informative. However, the wealth of structural and dynamic information which can be extracted from ESR spectroscopy is, at present, limited by the necessity of employing computationally efficient models, which are increasingly complex as they need to take into account diverse relaxation processes affecting the spectrum. In this paper, we address the basic theoretical tools needed to predict, essentially ab initio, CW-ESR spectra observables according to the stochastic Liouville equation (SLE) approach, combined with quantum mechanical and hybrid methods for the accurate and efficient computation of structural, spectroscopic and magnetic properties of molecular systems. We shall discuss, on one hand, the quantum mechanical calculation of magnetic observables, via density functional theory (DFT), time-dependent DFT (TD-DFT) and application of the polarizable continuum model (PCM) for the description of environmental effects, including anisotropic environments and systems where different regions are characterized by different dielectric constants. One the other hand, the explicit evaluation of dynamical effects will be discussed based on the numerically exact treatment of the SLE in the presence of several relaxation processes, which has been proven to be a challenging task.

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Year:  2006        PMID: 17047758     DOI: 10.1039/b607998a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  9 in total

Review 1.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

2.  An improved picture of methyl dynamics in proteins from slowly relaxing local structure analysis of 2H spin relaxation.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem B       Date:  2007-10-17       Impact factor: 2.991

3.  Performance of DFT methods in the calculation of isotropic and dipolar contributions to 14N hyperfine coupling constants of nitroxide radicals.

Authors:  Oleg I Gromov; Sergei V Kuzin; Elena N Golubeva
Journal:  J Mol Model       Date:  2019-03-11       Impact factor: 1.810

4.  Backbone dynamics of deoxy and carbonmonoxy hemoglobin by NMR/SRLS.

Authors:  Eva Meirovitch; Mirco Zerbetto; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem B       Date:  2010-12-16       Impact factor: 2.991

5.  Methyl dynamics of a Ca2+-calmodulin-peptide complex from NMR/SRLS.

Authors:  Yury E Shapiro; Antonino Polimeno; Jack H Freed; Eva Meirovitch
Journal:  J Phys Chem B       Date:  2010-12-17       Impact factor: 2.991

6.  Integrated computational approach to the analysis of NMR relaxation in proteins: application to ps-ns main chain 15N-1H and global dynamics of the Rho GTPase binding domain of plexin-B1.

Authors:  Mirco Zerbetto; Matthias Buck; Eva Meirovitch; Antonino Polimeno
Journal:  J Phys Chem B       Date:  2010-12-10       Impact factor: 2.991

7.  Integrated Computational Approach to the Electron Paramagnetic Resonance Characterization of Rigid 310-Helical Peptides with TOAC Nitroxide Spin Labels.

Authors:  Marco Gerolin; Mirco Zerbetto; Alessandro Moretto; Fernando Formaggio; Claudio Toniolo; Martin van Son; Maryam Hashemi Shabestari; Martina Huber; Paolo Calligari; Antonino Polimeno
Journal:  J Phys Chem B       Date:  2017-04-19       Impact factor: 2.991

8.  The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy.

Authors:  Vincenzo Barone
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2016 Mar/Apr

9.  Extension of the AMBER Force Field for Nitroxide Radicals and Combined QM/MM/PCM Approach to the Accurate Determination of EPR Parameters of DMPO-H in Solution.

Authors:  Laura Hermosilla; Giacomo Prampolini; Paloma Calle; José Manuel García de la Vega; Giuseppe Brancato; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2013-07-15       Impact factor: 6.006

  9 in total

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