Literature DB >> 17041633

Genomics meets HIV-1.

Amalio Telenti1, David B Goldstein.   

Abstract

Genomics is now a core element in the effort to develop a vaccine against HIV-1. Thanks to unprecedented progress in high-throughput genotyping and sequencing, in knowledge about genetic variation in humans, and in evolutionary genomics, it is finally possible to systematically search the genome for common genetic variants that influence the human response to HIV-1. The identification of such variants would help to determine which aspects of the response to the virus are the most promising targets for intervention. However, a key obstacle to progress remains the scarcity of appropriate human cohorts available for genomic research.

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Year:  2006        PMID: 17041633      PMCID: PMC2043131          DOI: 10.1038/nrmicro1532

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  75 in total

Review 1.  Defying death--HIV mutation to evade cytotoxic T lymphocytes.

Authors:  Judy Lieberman
Journal:  N Engl J Med       Date:  2002-10-10       Impact factor: 91.245

Review 2.  Genomics of the evolutionary process.

Authors:  Andrew G Clark
Journal:  Trends Ecol Evol       Date:  2006-05-05       Impact factor: 17.712

Review 3.  Positive natural selection in the human lineage.

Authors:  P C Sabeti; S F Schaffner; B Fry; J Lohmueller; P Varilly; O Shamovsky; A Palma; T S Mikkelsen; D Altshuler; E S Lander
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

4.  HIV controllers: a homogeneous group of HIV-1-infected patients with spontaneous control of viral replication.

Authors:  Olivier Lambotte; Faroudy Boufassa; Yoann Madec; Ahn Nguyen; Cécile Goujard; Laurence Meyer; Christine Rouzioux; Alain Venet; Jean-François Delfraissy
Journal:  Clin Infect Dis       Date:  2005-08-30       Impact factor: 9.079

5.  Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates.

Authors:  Jennifer G Sambrook; Arman Bashirova; Sophie Palmer; Sarah Sims; John Trowsdale; Laurent Abi-Rached; Peter Parham; Mary Carrington; Stephan Beck
Journal:  Genome Res       Date:  2005-01       Impact factor: 9.043

6.  Advantage of rare HLA supertype in HIV disease progression.

Authors:  Elizabeth Trachtenberg; Bette Korber; Cristina Sollars; Thomas B Kepler; Peter T Hraber; Elizabeth Hayes; Robert Funkhouser; Michael Fugate; James Theiler; Yen S Hsu; Kevin Kunstman; Samuel Wu; John Phair; Henry Erlich; Steven Wolinsky
Journal:  Nat Med       Date:  2003-07       Impact factor: 53.440

Review 7.  What can natural infection of African monkeys with simian immunodeficiency virus tell us about the pathogenesis of AIDS?

Authors:  Vanessa M Hirsch
Journal:  AIDS Rev       Date:  2004 Jan-Mar       Impact factor: 2.500

8.  The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.

Authors:  Matthew Stremlau; Christopher M Owens; Michel J Perron; Michael Kiessling; Patrick Autissier; Joseph Sodroski
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

9.  The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region.

Authors:  Luis B Barreiro; Etienne Patin; Olivier Neyrolles; Howard M Cann; Brigitte Gicquel; Lluís Quintana-Murci
Journal:  Am J Hum Genet       Date:  2005-09-29       Impact factor: 11.025

10.  Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G.

Authors:  Sara L Sawyer; Michael Emerman; Harmit S Malik
Journal:  PLoS Biol       Date:  2004-07-20       Impact factor: 8.029

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  22 in total

1.  Impact of phenotype definition on genome-wide association signals: empirical evaluation in human immunodeficiency virus type 1 infection.

Authors:  Evangelos Evangelou; Jacques Fellay; Sara Colombo; Javier Martinez-Picado; Niels Obel; David B Goldstein; Amalio Telenti; John P A Ioannidis
Journal:  Am J Epidemiol       Date:  2011-04-13       Impact factor: 4.897

2.  WGAViewer: software for genomic annotation of whole genome association studies.

Authors:  Dongliang Ge; Kunlin Zhang; Anna C Need; Olivier Martin; Jacques Fellay; Thomas J Urban; Amalio Telenti; David B Goldstein
Journal:  Genome Res       Date:  2008-02-06       Impact factor: 9.043

3.  Sickle cell disease is associated with decreased HIV but higher HBV and HCV comorbidities in U.S. hospital discharge records: a cross-sectional study.

Authors:  Mehdi Nouraie; Sergei Nekhai; Victor R Gordeuk
Journal:  Sex Transm Infect       Date:  2012-05-24       Impact factor: 3.519

4.  Transcriptional profiling of CD4 T cells identifies distinct subgroups of HIV-1 elite controllers.

Authors:  Francois Vigneault; Matthew Woods; Maria J Buzon; Chun Li; Florencia Pereyra; Seth D Crosby; Jennifer Rychert; George Church; Javier Martinez-Picado; Eric S Rosenberg; Amalio Telenti; Xu G Yu; Mathias Lichterfeld
Journal:  J Virol       Date:  2010-12-22       Impact factor: 5.103

5.  Extended IL10 haplotypes and their association with HIV progression to AIDS.

Authors:  T K Oleksyk; S Shrestha; A L Truelove; J J Goedert; S M Donfield; J Phair; S Mehta; S J O'Brien; M W Smith
Journal:  Genes Immun       Date:  2009-03-19       Impact factor: 2.676

Review 6.  RNA interference-based therapeutics for human immunodeficiency virus HIV-1 treatment: synthetic siRNA or vector-based shRNA?

Authors:  Sandesh Subramanya; Sang-Soo Kim; N Manjunath; Premlata Shankar
Journal:  Expert Opin Biol Ther       Date:  2010-02       Impact factor: 4.388

7.  Host genetics and HIV-1 viral load set-point in African-Americans.

Authors:  Sadeep Shrestha; Brahim Aissani; Wei Song; Craig M Wilson; Richard A Kaslow; Jianming Tang
Journal:  AIDS       Date:  2009-03-27       Impact factor: 4.177

Review 8.  Host genetics influences on HIV type-1 disease.

Authors:  Jacques Fellay
Journal:  Antivir Ther       Date:  2009

Review 9.  Critical issues in mucosal immunity for HIV-1 vaccine development.

Authors:  Barton F Haynes; Robin J Shattock
Journal:  J Allergy Clin Immunol       Date:  2008-05-12       Impact factor: 10.793

10.  Common genetic variation and the control of HIV-1 in humans.

Authors:  Jacques Fellay; Dongliang Ge; Kevin V Shianna; Sara Colombo; Bruno Ledergerber; Elizabeth T Cirulli; Thomas J Urban; Kunlin Zhang; Curtis E Gumbs; Jason P Smith; Antonella Castagna; Alessandro Cozzi-Lepri; Andrea De Luca; Philippa Easterbrook; Huldrych F Günthard; Simon Mallal; Cristina Mussini; Judith Dalmau; Javier Martinez-Picado; José M Miro; Niels Obel; Steven M Wolinsky; Jeremy J Martinson; Roger Detels; Joseph B Margolick; Lisa P Jacobson; Patrick Descombes; Stylianos E Antonarakis; Jacques S Beckmann; Stephen J O'Brien; Norman L Letvin; Andrew J McMichael; Barton F Haynes; Mary Carrington; Sheng Feng; Amalio Telenti; David B Goldstein
Journal:  PLoS Genet       Date:  2009-12-24       Impact factor: 5.917

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