Literature DB >> 17035667

SAR by NMR: putting the pieces together.

Philip J Hajduk1.   

Abstract

It has been nearly ten years since the introduction of SAR by NMR and the advent of fragment-based drug design. During this time, we have gained a tremendous amount of knowledge about protein druggability, the limits of chemical diversity, and crafting high-affinity ligands from low molecular weight, weakly binding leads. This review will describe the concept of fragment-based drug design, discuss why it works, and illustrate the power of the approach with two case studies on the design of potent inhibitors of matrix metalloproteinases and Bcl-2 family proteins.

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Year:  2006        PMID: 17035667     DOI: 10.1124/mi.6.5.8

Source DB:  PubMed          Journal:  Mol Interv        ISSN: 1534-0384


  19 in total

1.  NMR-based design and evaluation of novel bidentate inhibitors of the protein tyrosine phosphatase YopH.

Authors:  Marilisa Leone; Elisa Barile; Jesus Vazquez; Angel Mei; Donald Guiney; Russel Dahl; Maurizio Pellecchia
Journal:  Chem Biol Drug Des       Date:  2010-04-28       Impact factor: 2.817

2.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

3.  A suite of modular fluorescence assays interrogate the human immunodeficiency virus glycoprotein-41 coiled coil and assist in determining binding mechanism of low molecular weight fusion inhibitors.

Authors:  Miriam Gochin
Journal:  Assay Drug Dev Technol       Date:  2012-08-16       Impact factor: 1.738

4.  Inhibition of protein-protein interactions with low molecular weight compounds.

Authors:  Marilyn M Matthews; David J Weber; Paul S Shapiro; Andrew Coop; Alexander D Mackerell
Journal:  Curr Trends Med Chem       Date:  2008-01-01

5.  Design of a high fragment efficiency library by molecular graph theory.

Authors:  Jennifer Venhorst; Sara Núñez; Chris G Kruse
Journal:  ACS Med Chem Lett       Date:  2010-09-03       Impact factor: 4.345

6.  Automated assignment of NMR chemical shifts based on a known structure and 4D spectra.

Authors:  Matthias Trautwein; Kai Fredriksson; Heiko M Möller; Thomas E Exner
Journal:  J Biomol NMR       Date:  2016-08-02       Impact factor: 2.835

Review 7.  Examining weak protein-protein interactions in start codon recognition via NMR spectroscopy.

Authors:  Rafael E Luna; Sabine R Akabayov; Joshua J Ziarek; Gerhard Wagner
Journal:  FEBS J       Date:  2014-01-02       Impact factor: 5.542

Review 8.  Unraveling the structure and function of G protein-coupled receptors through NMR spectroscopy.

Authors:  Irina G Tikhonova; Stefano Costanzi
Journal:  Curr Pharm Des       Date:  2009       Impact factor: 3.116

Review 9.  Targeting Mdm2 and Mdmx in cancer therapy: better living through medicinal chemistry?

Authors:  Mark Wade; Geoffrey M Wahl
Journal:  Mol Cancer Res       Date:  2009-01       Impact factor: 5.852

10.  Comprehensive experimental and computational analysis of binding energy hot spots at the NF-κB essential modulator/IKKβ protein-protein interface.

Authors:  Mary S Golden; Shaun M Cote; Marianna Sayeg; Brandon S Zerbe; Elizabeth A Villar; Dmitri Beglov; Stephen L Sazinsky; Rosina M Georgiadis; Sandor Vajda; Dima Kozakov; Adrian Whitty
Journal:  J Am Chem Soc       Date:  2013-04-10       Impact factor: 15.419

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