Literature DB >> 17032289

Computing power in case-control association studies through the use of quadratic approximations: application to meta-statistics.

M Guedj1, E Della-Chiesa, F Picard, G Nuel.   

Abstract

In the framework of case-control studies many different test statistics are available to measure the association of a marker with a given disease. Nevertheless, choosing one particular statistic can lead to very different conclusions. In the absence of a consensus for this choice, a tempting option is to evaluate the power of these different statistics prior to make any decision. We review the available methods dedicated to power computation and assess their respective reliability in treating a wide range of tests on a wide range of alternative models. Considering Monte-Carlo, non-central chi-square and Delta-Method estimates, we evaluate empirical, asymptotic and numerical approaches. Additionally we introduce the use of the Delta-Method, extended to order 2, intended to provide better results than the traditional order-1 Delta-Method. Supplementary data can be found at: http://stat.genopole.cnrs.fr/software/dm2.

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Year:  2006        PMID: 17032289     DOI: 10.1111/j.1469-1809.2006.00316.x

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN: 0003-4800            Impact factor:   1.670


  5 in total

1.  Use of stochastic simulations to investigate the power and design of a whole genome association study using single nucleotide polymorphism arrays in farm animals.

Authors:  Benoît Auvray; Ken G Dodds
Journal:  J Zhejiang Univ Sci B       Date:  2007-11       Impact factor: 3.066

2.  Independent replication and meta analysis of association studies establish TNFSF4 as a susceptibility gene preferentially associated with the subset of anticentromere-positive patients with systemic sclerosis.

Authors:  Baptiste Coustet; Matthieu Bouaziz; Philippe Dieudé; Mickael Guedj; Lara Bossini-Castillo; Sandeep Agarwal; Timothy Radstake; Javier Martin; Pravitt Gourh; Muriel Elhai; Eugénie Koumakis; Jérôme Avouac; Barbara Ruiz; Maureen Mayes; Frank Arnett; Eric Hachulla; Elisabeth Diot; Jean-Luc Cracowski; Kiet Tiev; Jean Sibilia; Luc Mouthon; Camille Frances; Zahir Amoura; Patrick Carpentier; Anne Cosnes; Olivier Meyer; André Kahan; Catherine Boileau; Gilles Chiocchia; Yannick Allanore
Journal:  J Rheumatol       Date:  2012-03-15       Impact factor: 4.666

3.  Association study of ITGAM, ITGAX, and CD58 autoimmune risk loci in systemic sclerosis: results from 2 large European Caucasian cohorts.

Authors:  Baptiste Coustet; Sandeep K Agarwal; Pravitt Gourh; Mickael Guedj; Maureen D Mayes; Philippe Dieude; Julien Wipff; Jerome Avouac; Eric Hachulla; Elisabeth Diot; Jean Luc Cracowski; Kiet Tiev; Jean Sibilia; Luc Mouthon; Camille Frances; Zahir Amoura; Patrick Carpentier; Olivier Meyer; Andre Kahan; Catherine Boileau; Frank C Arnett; Yannick Allanore
Journal:  J Rheumatol       Date:  2011-03-01       Impact factor: 4.666

4.  Robust tests for single-marker analysis in case-control genetic association studies.

Authors:  Qizhai Li; Gang Zheng; Xueying Liang; Kai Yu
Journal:  Ann Hum Genet       Date:  2009-03       Impact factor: 1.670

5.  Statistical distributions of test statistics used for quantitative trait association mapping in structured populations.

Authors:  Simon Teyssèdre; Jean-Michel Elsen; Anne Ricard
Journal:  Genet Sel Evol       Date:  2012-11-12       Impact factor: 4.297

  5 in total

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