Literature DB >> 17031938

Site-specific conversion of cysteine thiols into thiocyanate creates an IR probe for electric fields in proteins.

Aaron T Fafarman1, Lauren J Webb, Jessica I Chuang, Steven G Boxer.   

Abstract

The nitrile stretching mode of the thiocyanate moiety is a nearly ideal probe for measuring the local electric field arising from the organized environment of the interior of a protein. Nitriles were introduced into three proteins: ribonuclease S (RNase S), human aldose reductase (hALR2), and the reaction center (RC) of Rhodobacter capsulatus, through a facile synthetic scheme for the transformation of cysteine residues into thiocyanatoalanine. Vibrational Stark effect spectroscopy and Fourier transform infrared spectroscopy on the modified proteins demonstrated that thiocyanate residues are a highly general tool for probing electrostatic fields in proteins.

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Year:  2006        PMID: 17031938      PMCID: PMC2516909          DOI: 10.1021/ja0650403

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

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Journal:  Arch Biochem Biophys       Date:  1959-05       Impact factor: 4.013

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Review 3.  Stark spectroscopy: applications in chemistry, biology, and materials science.

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Journal:  J Am Chem Soc       Date:  1970-11-18       Impact factor: 15.419

5.  Specifically targeted modification of human aldose reductase by physiological disulfides.

Authors:  M Cappiello; M Voltarelli; I Cecconi; P G Vilardo; M Dal Monte; I Marini; A Del Corso; D K Wilson; F A Quiocho; J M Petrash; U Mura
Journal:  J Biol Chem       Date:  1996-12-27       Impact factor: 5.157

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

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Journal:  Arch Biochem Biophys       Date:  1989-11-15       Impact factor: 4.013

8.  Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins.

Authors:  Ian T Suydam; Steven G Boxer
Journal:  Biochemistry       Date:  2003-10-21       Impact factor: 3.162

9.  13C NMR of cyanylated flavodoxin from Megasphaera elsdenii and of thiocyanate model compounds.

Authors:  G M Doherty; R Motherway; S G Mayhew; J P Malthouse
Journal:  Biochemistry       Date:  1992-09-01       Impact factor: 3.162

10.  Design and synthesis of highly potent and selective (2-arylcarbamoyl-phenoxy)-acetic acid inhibitors of aldose reductase for treatment of chronic diabetic complications.

Authors:  Michael C Van Zandt; Evelyn O Sibley; Erin E McCann; Kerry J Combs; Brenda Flam; Diane R Sawicki; Al Sabetta; Anne Carrington; Janet Sredy; Eduardo Howard; Andre Mitschler; Alberto D Podjarny
Journal:  Bioorg Med Chem       Date:  2004-11-01       Impact factor: 3.641

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  61 in total

1.  Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.

Authors:  Aaron T Fafarman; Paul A Sigala; Jason P Schwans; Timothy D Fenn; Daniel Herschlag; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation.

Authors:  Hyunil Jo; Robert M Culik; Ivan V Korendovych; William F Degrado; Feng Gai
Journal:  Biochemistry       Date:  2010-11-17       Impact factor: 3.162

3.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

4.  Do ligand binding and solvent exclusion alter the electrostatic character within the oxyanion hole of an enzymatic active site?

Authors:  Paul A Sigala; Aaron T Fafarman; Patrick E Bogard; Steven G Boxer; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-09-14       Impact factor: 15.419

5.  Solvatochromism and the solvation structure of benzophenone.

Authors:  Justin E Elenewski; John C Hackett
Journal:  J Chem Phys       Date:  2013-06-14       Impact factor: 3.488

6.  Vibrational stark effect probes for nucleic acids.

Authors:  Lisa N Silverman; Michael E Pitzer; Peter O Ankomah; Steven G Boxer; Edward E Fenlon
Journal:  J Phys Chem B       Date:  2007-09-18       Impact factor: 2.991

Review 7.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013

8.  A strongly absorbing class of non-natural labels for probing protein electrostatics and solvation with FTIR and 2D IR spectroscopies.

Authors:  Ann Marie Woys; Sudipta S Mukherjee; David R Skoff; Sean D Moran; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-04-15       Impact factor: 2.991

9.  Site-selective Characterization of Src Homology 3 Domain Molecular Recognition with Cyanophenylalanine Infrared Probes.

Authors:  Rachel E Horness; Edward J Basom; Megan C Thielges
Journal:  Anal Methods       Date:  2015-04-08       Impact factor: 2.896

10.  Fast dynamics of HP35 for folded and urea-unfolded conditions.

Authors:  Jean K Chung; Megan C Thielges; Stephen R Lynch; Michael D Fayer
Journal:  J Phys Chem B       Date:  2012-08-29       Impact factor: 2.991

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