Literature DB >> 17031795

Minimum reporting requirements for proteomics: a MIAPE primer.

Chris F Taylor1.   

Abstract

Amongst other functions, the Human Proteome Organization's Proteomics Standards Initiative (HUPO PSI) facilitates the generation by the proteomics community of guidelines that specify the appropriate level of detail to provide when describing the various components of a proteomics experiment. These guidelines are codified as the MIAPE (Minimum Information About a Proteomics Experiment) specification, the first modules of which are now finalized. This primer describes the structure and scope of MIAPE, places it in context amongst reporting specifications for other domains, briefly discusses related informatics resources and closes by considering the ramifications for the proteomics community.

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Year:  2006        PMID: 17031795     DOI: 10.1002/pmic.200600549

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  16 in total

1.  Proteomic parsimony through bipartite graph analysis improves accuracy and transparency.

Authors:  Bing Zhang; Matthew C Chambers; David L Tabb
Journal:  J Proteome Res       Date:  2007-08-04       Impact factor: 4.466

Review 2.  Recent advances in neuroproteomics.

Authors:  Erika C Andrade; Dilja D Krueger; Angus C Nairn
Journal:  Curr Opin Mol Ther       Date:  2007-06

3.  Target-decoy search strategy for mass spectrometry-based proteomics.

Authors:  Joshua E Elias; Steven P Gygi
Journal:  Methods Mol Biol       Date:  2010

Review 4.  Applying mass spectrometry-based proteomics to genetics, genomics and network biology.

Authors:  Matthias Gstaiger; Ruedi Aebersold
Journal:  Nat Rev Genet       Date:  2009-09       Impact factor: 53.242

5.  YPED: a web-accessible database system for protein expression analysis.

Authors:  Mark A Shifman; Yuli Li; Christopher M Colangelo; Kathryn L Stone; Terence L Wu; Kei-Hoi Cheung; Perry L Miller; Kenneth R Williams
Journal:  J Proteome Res       Date:  2007-09-15       Impact factor: 4.466

Review 6.  Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity.

Authors:  Josh Tycko; Vic E Myer; Patrick D Hsu
Journal:  Mol Cell       Date:  2016-08-04       Impact factor: 17.970

7.  Methods for Proteomic Analyses of Mycobacteria.

Authors:  Carolina Mehaffy; Megan Lucas; Nicole A Kruh-Garcia; Karen M Dobos
Journal:  Methods Mol Biol       Date:  2021

8.  PeptideDepot: flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information.

Authors:  Kebing Yu; Arthur R Salomon
Journal:  Proteomics       Date:  2009-12       Impact factor: 3.984

9.  Statistical analysis of variation in the human plasma proteome.

Authors:  Todd H Corzett; Imola K Fodor; Megan W Choi; Vicki L Walsworth; Kenneth W Turteltaub; Sandra L McCutchen-Maloney; Brett A Chromy
Journal:  J Biomed Biotechnol       Date:  2010-01-14

10.  XperimentR: painless annotation of a biological experiment for the laboratory scientist.

Authors:  Chris D Tomlinson; Geraint R Barton; Mark Woodbridge; Sarah A Butcher
Journal:  BMC Bioinformatics       Date:  2013-01-16       Impact factor: 3.169

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