Literature DB >> 17029704

Sustained oscillations in glycolysis: an experimental and theoretical study of chaotic and complex periodic behavior and of quenching of simple oscillations.

K Nielsen1, P G Sørensen, F Hynne, H G Busse.   

Abstract

We report sustained oscillations in glycolysis conducted in an open system (a continuous-flow, stirred tank reactor; CSTR) with inflow of yeast extract as well as glucose. Depending on the operating conditions, we observe simple or complex periodic oscillations or chaos. We report the response of the system to instantaneous additions of small amounts of several substrates as functions of the amount added and the phase of the addition. We simulate oscillations and perturbations by a kinetic model based on the mechanism of glycolysis in a CSTR. We find that the response to particular perturbations forms an efficient tool for elucidating the mechanism of biochemical oscillations.

Entities:  

Year:  1998        PMID: 17029704     DOI: 10.1016/s0301-4622(98)00122-7

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  13 in total

1.  A Digitally Programmable Cytomorphic Chip for Simulation of Arbitrary Biochemical Reaction Networks.

Authors:  Sung Sik Woo; Jaewook Kim; Rahul Sarpeshkar
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2018-04       Impact factor: 3.833

2.  A scalable and integrative system for pathway bioinformatics and systems biology.

Authors:  Behnam Compani; Trent Su; Ivan Chang; Jianlin Cheng; Kandarp H Shah; Thomas Whisenant; Yimeng Dou; Adriel Bergmann; Raymond Cheong; Barbara Wold; Lee Bardwell; Andre Levchenko; Pierre Baldi; Eric Mjolsness
Journal:  Adv Exp Med Biol       Date:  2010       Impact factor: 2.622

3.  Global self-regulation of the cellular metabolic structure.

Authors:  Ildefonso M De la Fuente; Fernando Vadillo; Alberto Luís Pérez-Samartín; Martín-Blas Pérez-Pinilla; Joseba Bidaurrazaga; Antonio Vera-López
Journal:  PLoS One       Date:  2010-03-02       Impact factor: 3.240

Review 4.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

5.  The effect of unhealthy β-cells on insulin secretion in pancreatic islets.

Authors:  Yang Pu; Saangho Lee; David C Samuels; Layne T Watson; Yang Cao
Journal:  BMC Med Genomics       Date:  2013-11-11       Impact factor: 3.063

6.  Discerning mechanistically rewired biological pathways by cumulative interaction heterogeneity statistics.

Authors:  Travis B Cotton; Hien H Nguyen; Joseph I Said; Zhengyu Ouyang; Jinfa Zhang; Mingzhou Song
Journal:  Sci Rep       Date:  2015-04-28       Impact factor: 4.379

7.  The number of catalytic elements is crucial for the emergence of metabolic cores.

Authors:  Ildefonso M De la Fuente; Fernando Vadillo; Martín-Blas Pérez-Pinilla; Antonio Vera-López; Juan Veguillas
Journal:  PLoS One       Date:  2009-10-19       Impact factor: 3.240

8.  A kinetic core model of the glucose-stimulated insulin secretion network of pancreatic beta cells.

Authors:  Nan Jiang; Roger D Cox; John M Hancock
Journal:  Mamm Genome       Date:  2007-05-21       Impact factor: 2.957

9.  Exploring the genetic control of glycolytic oscillations in Saccharomyces cerevisiae.

Authors:  Thomas Williamson; Delali Adiamah; Jean-Marc Schwartz; Lubomira Stateva
Journal:  BMC Syst Biol       Date:  2012-08-24

10.  Mathematical model of metabolism and electrophysiology of amino acid and glucose stimulated insulin secretion: in vitro validation using a β-cell line.

Authors:  Manuela Salvucci; Zoltan Neufeld; Philip Newsholme
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

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