Literature DB >> 17514510

A kinetic core model of the glucose-stimulated insulin secretion network of pancreatic beta cells.

Nan Jiang1, Roger D Cox, John M Hancock.   

Abstract

The construction and characterization of a core kinetic model of the glucose-stimulated insulin secretion system (GSIS) in pancreatic beta cells is described. The model consists of 44 enzymatic reactions, 59 metabolic state variables, and 272 parameters. It integrates five subsystems: glycolysis, the TCA cycle, the respiratory chain, NADH shuttles, and the pyruvate cycle. It also takes into account compartmentalization of the reactions in the cytoplasm and mitochondrial matrix. The model shows expected behavior in its outputs, including the response of ATP production to starting glucose concentration and the induction of oscillations of metabolite concentrations in the glycolytic pathway and in ATP and ADP concentrations. Identification of choke points and parameter sensitivity analysis indicate that the glycolytic pathway, and to a lesser extent the TCA cycle, are critical to the proper behavior of the system, while parameters in other components such as the respiratory chain are less critical. Notably, however, sensitivity analysis identifies the first reactions of nonglycolytic pathways as being important for the behavior of the system. The model is robust to deletion of malic enzyme activity, which is absent in mouse pancreatic beta cells. The model represents a step toward the construction of a model with species-specific parameters that can be used to understand mouse models of diabetes and the relationship of these mouse models to the human disease state.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17514510      PMCID: PMC1998884          DOI: 10.1007/s00335-007-9011-y

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  39 in total

1.  A simplified model for mitochondrial ATP production.

Authors:  Richard Bertram; Morten Gram Pedersen; Dan S Luciani; Arthur Sherman
Journal:  J Theor Biol       Date:  2006-07-25       Impact factor: 2.691

2.  Nicotinamide nucleotide transhydrogenase: a key role in insulin secretion.

Authors:  Helen Freeman; Kenju Shimomura; Emma Horner; Roger D Cox; Frances M Ashcroft
Journal:  Cell Metab       Date:  2006-01       Impact factor: 27.287

3.  A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell.

Authors:  Pål O Westermark; Jeanette Hellgren Kotaleski; Anneli Björklund; Valdemar Grill; Anders Lansner
Journal:  Am J Physiol Endocrinol Metab       Date:  2006-07-18       Impact factor: 4.310

Review 4.  Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.

Authors:  M Hucka; A Finney; B J Bornstein; S M Keating; B E Shapiro; J Matthews; B L Kovitz; M J Schilstra; A Funahashi; J C Doyle; H Kitano
Journal:  Syst Biol (Stevenage)       Date:  2004-06

5.  Nonsense mutation in the glucokinase gene causes early-onset non-insulin-dependent diabetes mellitus.

Authors:  N Vionnet; M Stoffel; J Takeda; K Yasuda; G I Bell; H Zouali; S Lesage; G Velho; F Iris; P Passa
Journal:  Nature       Date:  1992-04-23       Impact factor: 49.962

6.  Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks.

Authors:  Syed Asad Rahman; Dietmar Schomburg
Journal:  Bioinformatics       Date:  2006-05-08       Impact factor: 6.937

7.  Model of beta-cell mitochondrial calcium handling and electrical activity. I. Cytoplasmic variables.

Authors:  G Magnus; J Keizer
Journal:  Am J Physiol       Date:  1998-04

8.  Kinetic regulation of the mitochondrial glycerol-3-phosphate dehydrogenase by the external NADH dehydrogenase in Saccharomyces cerevisiae.

Authors:  Inga-Lill Påhlman; Christer Larsson; Nicole Averét; Odile Bunoust; Samira Boubekeur; Lena Gustafsson; Michel Rigoulet
Journal:  J Biol Chem       Date:  2002-05-24       Impact factor: 5.157

9.  A model of beta-cell mass, insulin, and glucose kinetics: pathways to diabetes.

Authors:  B Topp; K Promislow; G deVries; R M Miura; D T Finegood
Journal:  J Theor Biol       Date:  2000-10-21       Impact factor: 2.691

10.  Mathematical model of beta-cell glucose metabolism and insulin release. I. Glucokinase as glucosensor hypothesis.

Authors:  I R Sweet; F M Matschinsky
Journal:  Am J Physiol       Date:  1995-04
View more
  12 in total

Review 1.  Bursting and calcium oscillations in pancreatic beta-cells: specific pacemakers for specific mechanisms.

Authors:  L E Fridlyand; N Tamarina; L H Philipson
Journal:  Am J Physiol Endocrinol Metab       Date:  2010-07-13       Impact factor: 4.310

2.  Capillary LC-MS for high sensitivity metabolomic analysis of single islets of Langerhans.

Authors:  Qihui Ni; Kendra R Reid; Charles F Burant; Robert T Kennedy
Journal:  Anal Chem       Date:  2008-04-10       Impact factor: 6.986

Review 3.  Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.

Authors:  Jitin Singla; Kyle M McClary; Kate L White; Frank Alber; Andrej Sali; Raymond C Stevens
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

4.  Glucose sensing in the pancreatic beta cell: a computational systems analysis.

Authors:  Leonid E Fridlyand; Louis H Philipson
Journal:  Theor Biol Med Model       Date:  2010-05-24       Impact factor: 2.432

5.  Chronic reduction of the cytosolic or mitochondrial NAD(P)-malic enzyme does not affect insulin secretion in a rat insulinoma cell line.

Authors:  Laura J Brown; Melissa J Longacre; Noaman M Hasan; Mindy A Kendrick; Scott W Stoker; Michael J Macdonald
Journal:  J Biol Chem       Date:  2009-12-18       Impact factor: 5.157

6.  Toward integration of biological and physiological functions at multiple levels.

Authors:  Taishin Nomura
Journal:  Front Physiol       Date:  2010-12-29       Impact factor: 4.566

7.  Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins.

Authors:  Chrysanthi Ainali; Michelle Simon; Shiri Freilich; Octavio Espinosa; Lee Hazelwood; Sophia Tsoka; Christos A Ouzounis; John M Hancock
Journal:  BMC Evol Biol       Date:  2011-05-25       Impact factor: 3.260

8.  The effect of unhealthy β-cells on insulin secretion in pancreatic islets.

Authors:  Yang Pu; Saangho Lee; David C Samuels; Layne T Watson; Yang Cao
Journal:  BMC Med Genomics       Date:  2013-11-11       Impact factor: 3.063

9.  Mathematical model of metabolism and electrophysiology of amino acid and glucose stimulated insulin secretion: in vitro validation using a β-cell line.

Authors:  Manuela Salvucci; Zoltan Neufeld; Philip Newsholme
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

10.  The impact of mathematical modeling on the understanding of diabetes and related complications.

Authors:  I Ajmera; M Swat; C Laibe; N Le Novère; V Chelliah
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2013-07-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.