Literature DB >> 12718924

Membrane protein crystallization.

Martin Caffrey1.   

Abstract

The need for high-resolution structure information on membrane proteins is immediate and growing. Currently, the only reliable way to get it is crystallographically. The rate-limiting step from protein to structure is crystal production. An overview of the current ideas and experimental approaches prevailing in the area of membrane protein crystallization is presented. The long-established surfactant-based method has been reviewed extensively and is not examined in detail here. The focus instead is on the latest methods, all of which exploit the spontaneous self-assembling properties of lipids and detergent as vesicles (vesicle-fusion method), discoidal micelles (bicelle method), and liquid crystals or mesophases (in meso or cubic-phase method). In the belief that a knowledge of the underlying phase science is integral to understanding the molecular basis of these assorted crystallization strategies, the article begins with a brief primer on lipids, mesophases, and phase science, and the related issue of form and function as applied to lipids is addressed. The experimental challenges associated with and the solutions for procuring adequate amounts of homogeneous membrane proteins, or parts thereof, are examined. The cubic-phase method is described from the following perspectives: how it is done in practice, its general applicability and successes to date, and the nature of the mesophases integral to the process. Practical aspects of the method are examined with regard to salt, detergent, and screen solution effects; crystallization at low temperatures; tailoring the cubic phase to suit the target protein; different cubic-phase types; dealing with low-protein samples, colorless proteins, microcrystals, and radiation damage; transport within the cubic phase for drug design, cofactor retention, and phasing; using spectroscopy for quality control; harvesting crystals; and miniaturization and robotization for high-throughput screening. The section ends with a hypothesis for nucleation and growth of membrane protein crystals in meso. Thus far, the bicelle and vesicle-fusion methods have produced crystals of one membrane protein, bacteriorhodopsin. The experimental details of both methods are reviewed and their general applicability in the future is commented on. The three new methods are rationalized by analogy to crystallization in microgravity and with respect to epitaxy. A list of Web resources in the area of membrane protein crystallogenesis is included.

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Year:  2003        PMID: 12718924     DOI: 10.1016/s1047-8477(03)00043-1

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  93 in total

1.  The cubicon method for concentrating membrane proteins in the cubic mesophase.

Authors:  Pikyee Ma; Dietmar Weichert; Luba A Aleksandrov; Timothy J Jensen; John R Riordan; Xiangyu Liu; Brian K Kobilka; Martin Caffrey
Journal:  Nat Protoc       Date:  2017-08-03       Impact factor: 13.491

2.  Electron microscopic evidence for nucleation and growth of 3D acetylcholine receptor microcrystals in structured lipid-detergent matrices.

Authors:  Yoav Paas; Jean Cartaud; Michel Recouvreur; Regis Grailhe; Virginie Dufresne; Eva Pebay-Peyroula; Ehud M Landau; Jean-Pierre Changeux
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-17       Impact factor: 11.205

3.  LINKER: a web server to generate peptide sequences with extended conformation.

Authors:  Fan Xue; Zhong Gu; Jin-an Feng
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 4.  Protein crystallization in the structural genomics era.

Authors:  Alexander McPherson
Journal:  J Struct Funct Genomics       Date:  2004

Review 5.  Structures of membrane proteins.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2010-02       Impact factor: 5.318

6.  Combinatorial method for overexpression of membrane proteins in Escherichia coli.

Authors:  Shani Leviatan; Keisuke Sawada; Yoshinori Moriyama; Nathan Nelson
Journal:  J Biol Chem       Date:  2010-06-04       Impact factor: 5.157

7.  Towards predictive docking at aminergic G-protein coupled receptors.

Authors:  Jan Jakubík; Esam E El-Fakahany; Vladimír Doležal
Journal:  J Mol Model       Date:  2015-10-09       Impact factor: 1.810

Review 8.  Membrane protein crystallization in amphiphile phases: practical and theoretical considerations.

Authors:  Peter Nollert
Journal:  Prog Biophys Mol Biol       Date:  2004-10-07       Impact factor: 3.667

9.  Molecular dynamics simulations of bovine rhodopsin: influence of protonation states and different membrane-mimicking environments.

Authors:  Birgit Schlegel; Wolfgang Sippl; Hans-Dieter Höltje
Journal:  J Mol Model       Date:  2005-10-25       Impact factor: 1.810

Review 10.  Discovery of new GPCR biology: one receptor structure at a time.

Authors:  Michael A Hanson; Raymond C Stevens
Journal:  Structure       Date:  2009-01-14       Impact factor: 5.006

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