Literature DB >> 17027252

Archaic admixture in the human genome.

Jeffrey D Wall1, Michael F Hammer.   

Abstract

One of the enduring questions in the evolution of our species surrounds the fate of 'archaic' forms of Homo. Did Neanderthals go extinct without interbreeding with modern humans 25-40 thousand years ago or are their genes present among modern-day Europeans? Recent work suggests that Neanderthals and an as yet unidentified archaic African population contributed to at least 5% of the modern European and West African gene pools, respectively. Extensive sequencing of Neanderthal and other archaic human nuclear DNA has the potential to answer this question definitively within the next few years.

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Year:  2006        PMID: 17027252     DOI: 10.1016/j.gde.2006.09.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  18 in total

1.  Subdivision in an ancestral species creates asymmetry in gene trees.

Authors:  Montgomery Slatkin; Joshua L Pollack
Journal:  Mol Biol Evol       Date:  2008-08-09       Impact factor: 16.240

Review 2.  African genetic diversity: implications for human demographic history, modern human origins, and complex disease mapping.

Authors:  Michael C Campbell; Sarah A Tishkoff
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

3.  Testing for ancient admixture between closely related populations.

Authors:  Eric Y Durand; Nick Patterson; David Reich; Montgomery Slatkin
Journal:  Mol Biol Evol       Date:  2011-02-15       Impact factor: 16.240

4.  Length distributions of identity by descent reveal fine-scale demographic history.

Authors:  Pier Francesco Palamara; Todd Lencz; Ariel Darvasi; Itsik Pe'er
Journal:  Am J Hum Genet       Date:  2012-10-25       Impact factor: 11.025

5.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

Review 6.  The peopling of the African continent and the diaspora into the new world.

Authors:  Michael C Campbell; Jibril B Hirbo; Jeffrey P Townsend; Sarah A Tishkoff
Journal:  Curr Opin Genet Dev       Date:  2014-12       Impact factor: 5.578

7.  Testing for archaic hominin admixture on the X chromosome: model likelihoods for the modern human RRM2P4 region from summaries of genealogical topology under the structured coalescent.

Authors:  Murray P Cox; Fernando L Mendez; Tatiana M Karafet; Maya Metni Pilkington; Sarah B Kingan; Giovanni Destro-Bisol; Beverly I Strassmann; Michael F Hammer
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

8.  Formulating a historical and demographic model of recent human evolution based on resequencing data from noncoding regions.

Authors:  Guillaume Laval; Etienne Patin; Luis B Barreiro; Lluís Quintana-Murci
Journal:  PLoS One       Date:  2010-04-22       Impact factor: 3.240

9.  Detecting ancient admixture and estimating demographic parameters in multiple human populations.

Authors:  Jeffrey D Wall; Kirk E Lohmueller; Vincent Plagnol
Journal:  Mol Biol Evol       Date:  2009-05-06       Impact factor: 16.240

10.  Inference of human population history from individual whole-genome sequences.

Authors:  Heng Li; Richard Durbin
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

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