Literature DB >> 17025664

Two-angle model and phase diagram for chromatin.

Philipp M Diesinger1, Dieter W Heermann.   

Abstract

We have studied the phase diagram for chromatin within the framework of the two-angle model. Only a rough estimation of the forbidden surface of the phase diagram for chromatin was given in a previous work of Schiessel. We revealed the fine structure of this excluded-volume borderline numerically and analytically. Furthermore, we investigated the Coulomb repulsion of the DNA linkers to compare it with the previous results.

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Year:  2006        PMID： 17025664     DOI： 10.1103/PhysRevE.74.031904

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN： 1539-3755


  8 in total

1.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

2.  Histone depletion facilitates chromatin loops on the kilobasepair scale.

Authors:  Philipp M Diesinger; Susanne Kunkel; Jörg Langowski; Dieter W Heermann
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

3.  The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin.

Authors:  Philipp M Diesinger; Dieter W Heermann
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

4.  Depletion effects massively change chromatin properties and influence genome folding.

Authors:  Philipp M Diesinger; Dieter W Heermann
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

5.  Salt-modulated structure of polyelectrolyte-macroion complex fibers.

Authors:  Hoda Boroudjerdi; Ali Naji; Roland R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-07-28       Impact factor: 1.890

6.  Monte Carlo Simulations indicate that Chromati: Nanostructure is accessible by Light Microscopy.

Authors:  Philipp M Diesinger; Dieter W Heermann
Journal:  PMC Biophys       Date:  2010-06-10

7.  Hierarchies in eukaryotic genome organization: Insights from polymer theory and simulations.

Authors:  Balaji Vs Iyer; Martin Kenward; Gaurav Arya
Journal:  BMC Biophys       Date:  2011-04-15       Impact factor: 4.778

8.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488
  8 in total

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