Literature DB >> 17021943

NMR solution structure of the acylphosphatase from Escherichia coli.

Katiuscia Pagano1, Matteo Ramazzotti, Paolo Viglino, Gennaro Esposito, Donatella Degl'Innocenti, Niccolò Taddei, Alessandra Corazza.   

Abstract

The solution structure of Escherichia coli acylphosphatase (E. coli AcP), a small enzyme catalyzing the hydrolysis of acylphosphates, was determined by (1)H and (15)N NMR and restrained modelling calculation. In analogy with the other members of AcP family, E. coli AcP shows an alpha/beta sandwich domain composed of four antiparallel and one parallel beta-strand, assembled in a five-stranded beta-sheet facing two antiparallel alpha-helices. The pairwise RMSD values calculated for the backbone atoms of E. coli and Sulfolobus solfataricus AcP, Bovine common type AcP and Horse muscle AcP are 2.18, 5.31 and 5.12 A, respectively. No significant differences are present in the active site region and the catalytic residue side chains are consistently positioned in the structures.

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Year:  2006        PMID: 17021943     DOI: 10.1007/s10858-006-9073-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

1.  Three-dimensional structure of acylphosphatase. Refinement and structure analysis.

Authors:  A Pastore; V Saudek; G Ramponi; R J Williams
Journal:  J Mol Biol       Date:  1992-03-20       Impact factor: 5.469

2.  A simple method to quantitatively measure polypeptide JHNH alpha coupling constants from TOCSY or NOESY spectra.

Authors:  Y Wang; A M Nip; D S Wishart
Journal:  J Biomol NMR       Date:  1997-12       Impact factor: 2.835

3.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

4.  Crystal structure of common type acylphosphatase from bovine testis.

Authors:  M M Thunnissen; N Taddei; G Liguri; G Ramponi; P Nordlund
Journal:  Structure       Date:  1997-01-15       Impact factor: 5.006

5.  Crystal structure of a hyperthermophilic archaeal acylphosphatase from Pyrococcus horikoshii--structural insights into enzymatic catalysis, thermostability, and dimerization.

Authors:  Yuk-Yin Cheung; Sonia Y Lam; Wai-Kit Chu; Mark D Allen; Mark Bycroft; Kam-Bo Wong
Journal:  Biochemistry       Date:  2005-03-29       Impact factor: 3.162

6.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

7.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

8.  Studying the folding process of the acylphosphatase from Sulfolobus solfataricus. A comparative analysis with other proteins from the same superfamily.

Authors:  Francesco Bemporad; Cristina Capanni; Martino Calamai; Maria Luisa Tutino; Massimo Stefani; Fabrizio Chiti
Journal:  Biochemistry       Date:  2004-07-20       Impact factor: 3.162

9.  Aggregation of the Acylphosphatase from Sulfolobus solfataricus: the folded and partially unfolded states can both be precursors for amyloid formation.

Authors:  Georgia Plakoutsi; Niccolò Taddei; Massimo Stefani; Fabrizio Chiti
Journal:  J Biol Chem       Date:  2004-01-14       Impact factor: 5.157

10.  C-terminal region contributes to muscle acylphosphatase three-dimensional structure stabilisation.

Authors:  N Taddei; F Magherini; F Chiti; M Bucciantini; G Raugei; M Stefani; G Ramponi
Journal:  FEBS Lett       Date:  1996-04-15       Impact factor: 4.124

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  3 in total

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Authors:  Francesco Bemporad; Joerg Gsponer; Harri I Hopearuoho; Georgia Plakoutsi; Gianmarco Stati; Massimo Stefani; Niccolò Taddei; Michele Vendruscolo; Fabrizio Chiti
Journal:  EMBO J       Date:  2008-05-01       Impact factor: 11.598

2.  Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations.

Authors:  Gali Arad-Haase; Silvia G Chuartzman; Shlomi Dagan; Reinat Nevo; Maksim Kouza; Binh Khanh Mai; Hung Tien Nguyen; Mai Suan Li; Ziv Reich
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

3.  A hydrolase from Lactobacillus sakei moonlights as a transaminase.

Authors:  Quirin Sinz; Simone Freiding; Rudi F Vogel; Wilfried Schwab
Journal:  Appl Environ Microbiol       Date:  2013-01-25       Impact factor: 4.792

  3 in total

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