Literature DB >> 17013681

Enhanced signal dispersion in saturation transfer difference experiments by conversion to a 1D-STD-homodecoupled spectrum.

Manuel Martín-Pastor1, Marino Vega-Vázquez, Antonia De Capua, Angeles Canales, Sabine André, Hans-Joachim Gabius, Jesús Jiménez-Barbero.   

Abstract

The saturation transfer difference (STD) experiment is a rich source of information on topological aspects of ligand binding to a receptor. The epitope mapping is based on a magnetization transfer after signal saturation from the receptor to the ligand, where interproton distances permit this process. Signal overlap in the STD spectrum can cause difficulties to correctly assign and/or quantitate the measured enhancements. To address this issue we report here a modified version of the routine experiment and a processing scheme that provides a 1D-STD homodecoupled spectrum (i.e. an experiment in which all STD signals appear as singlets) with line widths similar to those in original STD spectrum. These refinements contribute to alleviate problems of signal overlap. The experiment is based on 2D-J-resolved spectroscopy, one of the fastest 2D experiments under conventional data sampling in the indirect dimension, and provides excellent sensitivity, a key factor for the difference experiments.

Mesh:

Year:  2006        PMID: 17013681     DOI: 10.1007/s10858-006-9055-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  44 in total

1.  Theoretical analysis of the inter-ligand overhauser effect: a new approach for mapping structural relationships of macromolecular ligands.

Authors:  R E London
Journal:  J Magn Reson       Date:  1999-12       Impact factor: 2.229

2.  Measurement of longitudinal and rotating frame relaxation times through fully J-decoupled homonuclear spectra.

Authors:  F Guenneau; P Mutzenhardt; D Grandclaude; D Canet
Journal:  J Magn Reson       Date:  1999-09       Impact factor: 2.229

3.  The inter-ligand Overhauser effect: a powerful new NMR approach for mapping structural relationships of macromolecular ligands.

Authors:  D Li; E F DeRose; R E London
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

Review 4.  Eukaryotic glycosylation: whim of nature or multipurpose tool?

Authors:  G Reuter; H J Gabius
Journal:  Cell Mol Life Sci       Date:  1999-03       Impact factor: 9.261

5.  1D saturation transfer difference NMR experiments on living cells: the DC-SIGN/oligomannose interaction.

Authors:  Silvia Mari; Diego Serrano-Gómez; F Javier Cañada; Angel L Corbí; Jesús Jiménez-Barbero
Journal:  Angew Chem Int Ed Engl       Date:  2004-12-27       Impact factor: 15.336

6.  A straightforward NMR-spectroscopy-based method for rapid library screening.

Authors:  Aloysius H Siriwardena; Fang Tian; Schroder Noble; James H Prestegard
Journal:  Angew Chem Int Ed Engl       Date:  2002-09-16       Impact factor: 15.336

7.  Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor.

Authors:  M Mayer; B Meyer
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

8.  Direct observation of ligand binding to membrane proteins in living cells by a saturation transfer double difference (STDD) NMR spectroscopy method shows a significantly higher affinity of integrin alpha(IIb)beta3 in native platelets than in liposomes.

Authors:  Birgit Claasen; Marco Axmann; Robert Meinecke; Bernd Meyer
Journal:  J Am Chem Soc       Date:  2005-01-26       Impact factor: 15.419

9.  Hippocampal neurons and recombinant galectins as tools for systematic carbohydrate structure-function studies in neuronal differentiation.

Authors:  Jürgen Kopitz; Roland Russwurm; Herbert Kaltner; Sabine André; Carlos G Dotti; Hans-Joachim Gabius; José Abad-Rodríguez
Journal:  Brain Res Dev Brain Res       Date:  2004-11-25

Review 10.  Glycohistochemistry: the why and how of detection and localization of endogenous lectins.

Authors:  H J Gabius
Journal:  Anat Histol Embryol       Date:  2001-02       Impact factor: 1.114

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