Literature DB >> 17012785

Preparation, crystallization and preliminary X-ray analysis of protein YtlP from Bacillus subtilis.

Cong Liu1, Dan Li, Lars Hederstedt, Lanfen Li, Yu He Liang, Xiao Dong Su.   

Abstract

Bacillus subtilis YtlP is a protein that is predicted to belong to the bacterial and archael 2'-5' RNA-ligase family. It contains 183 residues and two copies of the HXTX sequence motif conserved among proteins belonging to this family. In order to determine the structure of YtlP and to compare it with the paralogue YjcG and identified 2'-5' RNA ligases, the gene ytlP was amplified from B. subtilis genomic DNA and cloned into expression vector pET-21a. The soluble protein was produced in Escherichia coli, purified to homogeneity and crystals suitable for X-ray analysis were obtained. The crystal diffracted to 2.0 A and belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 34.16, b = 48.54, c = 105.75 A.

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Year:  2006        PMID: 17012785      PMCID: PMC2225199          DOI: 10.1107/S174430910603199X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

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Authors:  A Hofmann; A Zdanov; P Genschik; S Ruvinov; W Filipowicz; A Wlodawer
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

2.  Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8.

Authors:  Miyuki Kato; Mikako Shirouzu; Takaho Terada; Hiroto Yamaguchi; Kazutaka Murayama; Hiroaki Sakai; Seiki Kuramitsu; Shigeyuki Yokoyama
Journal:  J Mol Biol       Date:  2003-06-20       Impact factor: 5.469

3.  Structural evidence that brain cyclic nucleotide phosphodiesterase is a member of the 2H phosphodiesterase superfamily.

Authors:  Guennadi Kozlov; John Lee; Demetra Elias; Michel Gravel; Pablo Gutierrez; Irena Ekiel; Peter E Braun; Kalle Gehring
Journal:  J Biol Chem       Date:  2003-08-28       Impact factor: 5.157

4.  Crystal structure of the catalytic fragment of human brain 2',3'-cyclic-nucleotide 3'-phosphodiesterase.

Authors:  Yasumitsu Sakamoto; Nobutada Tanaka; Tomomi Ichimiya; Tadashi Kurihara; Kazuo T Nakamura
Journal:  J Mol Biol       Date:  2005-01-12       Impact factor: 5.469

5.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Structure of a putative 2'-5' RNA ligase from Pyrococcus horikoshii.

Authors:  Peter H Rehse; Tahir H Tahirov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-08-16

8.  The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption.

Authors:  E A Arn; J N Abelson
Journal:  J Biol Chem       Date:  1996-12-06       Impact factor: 5.157

9.  Preparation, crystallization and preliminary X-ray analysis of YjcG protein from Bacillus subtilis.

Authors:  Dan Li; Chiomui Chan; Yu He Liang; Xiaofeng Zheng; Lanfen Li; Xiao Dong Su
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-04-22

10.  Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily.

Authors:  Raja Mazumder; Lakshminarayan M Iyer; Sona Vasudevan; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

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