Literature DB >> 16511078

Preparation, crystallization and preliminary X-ray analysis of YjcG protein from Bacillus subtilis.

Dan Li1, Chiomui Chan, Yu He Liang, Xiaofeng Zheng, Lanfen Li, Xiao Dong Su.   

Abstract

Bacillus subtilis YjcG is a functionally uncharacterized protein with 171 residues that has no structural homologue in the Protein Data Bank. However, it shows sequence homology to bacterial and archaeal 2'-5' RNA ligases. In order to identify its exact function via structural studies, the yjcG gene was amplified from B. subtilis genomic DNA and cloned into the expression vector pET21-DEST. The protein was expressed in a soluble form in Escherichia coli and was purified to homogeneity. Crystals suitable for X-ray analysis were obtained that diffracted to 2.3 A and belonged to space group C2, with unit-cell parameters a = 99.66, b = 73.93, c = 61.77 A, beta = 113.56 degrees.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16511078      PMCID: PMC1952297          DOI: 10.1107/S1744309105011012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

1.  Protein preparation, crystallization and preliminary X-ray analysis of human adrenal gland protein AD-004.

Authors:  Hui Ren; Yuhe Liang; Rui Li; Haitao Ding; Shihong Qiu; Shanyun Lu; Jianli An; Lanfen Li; Ming Luo; Xiaofeng Zheng; Xiao Dong Su
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-06-22

2.  Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8.

Authors:  Miyuki Kato; Mikako Shirouzu; Takaho Terada; Hiroto Yamaguchi; Kazutaka Murayama; Hiroaki Sakai; Seiki Kuramitsu; Shigeyuki Yokoyama
Journal:  J Mol Biol       Date:  2003-06-20       Impact factor: 5.469

3.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption.

Authors:  E A Arn; J N Abelson
Journal:  J Biol Chem       Date:  1996-12-06       Impact factor: 5.157

7.  RNA ligase in bacteria: formation of a 2',5' linkage by an E. coli extract.

Authors:  C L Greer; B Javor; J Abelson
Journal:  Cell       Date:  1983-07       Impact factor: 41.582

8.  Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily.

Authors:  Raja Mazumder; Lakshminarayan M Iyer; Sona Vasudevan; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

  8 in total
  2 in total

1.  Preparation, crystallization and preliminary X-ray analysis of protein YtlP from Bacillus subtilis.

Authors:  Cong Liu; Dan Li; Lars Hederstedt; Lanfen Li; Yu He Liang; Xiao Dong Su
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-09-19

2.  Novel C16orf57 mutations in patients with Poikiloderma with Neutropenia: bioinformatic analysis of the protein and predicted effects of all reported mutations.

Authors:  Elisa A Colombo; J Fernando Bazan; Gloria Negri; Cristina Gervasini; Nursel H Elcioglu; Deniz Yucelten; Ilknur Altunay; Umram Cetincelik; Anna Teti; Andrea Del Fattore; Matteo Luciani; Spencer K Sullivan; Albert C Yan; Ludovica Volpi; Lidia Larizza
Journal:  Orphanet J Rare Dis       Date:  2012-01-23       Impact factor: 4.123

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.