Literature DB >> 17012220

Beverage-agarose gel electrophoresis: an inquiry-based laboratory exercise with virtual adaptation.

Steven C Cunningham1, Brad McNear, Rebecca S Pearlman, Scott E Kern.   

Abstract

A wide range of literature and experience has shown that teaching methods that promote active learning, such as inquiry-based approaches, are more effective than those that rely on passive learning. Gel electrophoresis, one of the most common laboratory techniques in molecular biology, has a wide range of applications in the life sciences. As such, we chose it as a platform to expose high school and undergraduate students to the active process of scientific inquiry in general, while specifically teaching electrophoresis. First, we optimized DNA electrophoresis in the laboratory by using common beverages instead of standard media (e.g., Tris-based media). Second, we adapted this laboratory process of progressive optimization to a Web-based format in which students had to achieve all the same steps of optimization by performing serial electrophoreses. And third, we evaluated the use of this entirely Web-based virtual laboratory exercise in high school and undergraduate biology courses. Students learned fundamental and practical principles of electrophoresis, while experiencing the essential inquiry-based process of optimizing a technique, and they also enjoyed it. Our findings provide a readily accessible, inexpensive, and intriguing technique for teaching electrophoresis and the progressive optimization of a laboratory technique.

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Year:  2006        PMID: 17012220      PMCID: PMC1618695          DOI: 10.1187/cbe.06-01-0139

Source DB:  PubMed          Journal:  CBE Life Sci Educ        ISSN: 1931-7913            Impact factor:   3.325


  6 in total

1.  Analysis of organic acids and inorganic anions in different types of beer using capillary zone electrophoresis.

Authors:  C W Klampfl
Journal:  J Agric Food Chem       Date:  1999-03       Impact factor: 5.279

Review 2.  History and principles of conductive media for standard DNA electrophoresis.

Authors:  Jonathan R Brody; Scott E Kern
Journal:  Anal Biochem       Date:  2004-10-01       Impact factor: 3.365

3.  Using a module-based laboratory to incorporate inquiry into a large cell biology course.

Authors:  David R Howard; Jennifer A Miskowski
Journal:  Cell Biol Educ       Date:  2005

4.  An electrophoretic investigation of the mixture of oligonucleotides formed by the enzymic degradation of deoxyribonucleic acid by deoxyribonuclease.

Authors:  A H GORDON; P REICHARD
Journal:  Biochem J       Date:  1951-05       Impact factor: 3.857

5.  The chromosome of bacteriophage T5. I. Analysis of the single-stranded DNA fragments by agarose gel electrophoresis.

Authors:  G S Hayward; M G Smith
Journal:  J Mol Biol       Date:  1972-02-14       Impact factor: 5.469

6.  The gel electrophoresis of DNA.

Authors:  C Aaij; P Borst
Journal:  Biochim Biophys Acta       Date:  1972-05-10
  6 in total
  3 in total

1.  Development of higher-level cognitive skills in a learner-centered lab on extensions of mendelian inheritance using Drosophila.

Authors:  Pamela A Marshall
Journal:  J Microbiol Biol Educ       Date:  2008-12-17

2.  Using Saccharomyces cerevisiae to test the mutagenicity of household compounds: an open ended hypothesis-driven teaching lab.

Authors:  Pamela A Marshall
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

3.  Context matters: volunteer bias, small sample size, and the value of comparison groups in the assessment of research-based undergraduate introductory biology lab courses.

Authors:  Sara E Brownell; Matthew J Kloser; Tadashi Fukami; Richard J Shavelson
Journal:  J Microbiol Biol Educ       Date:  2013-12-02
  3 in total

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