Literature DB >> 17012025

Proteomic identification of palmitoylated proteins.

Amy F Roth1, Junmei Wan, William N Green, John R Yates, Nicholas G Davis.   

Abstract

A proteomic method that purifies and identifies palmitoylated proteins from complex protein extracts is described. Using the fatty acid exchange labeling chemistry (described in the preceding report), palmitoyl modifications are exchanged for biotinylated compounds, allowing the subset of palmitoyl-proteins to be affinity-purified and then identified by mass spectroscopic protein identification technologies. The advantages and pitfalls of this new technology are discussed within the context of the recent application of this method in the yeast Saccharomyces cerevisiae.

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Year:  2006        PMID： 17012025      PMCID： PMC2806795          DOI： 10.1016/j.ymeth.2006.05.026

Source DB:  PubMed          Journal:  Methods        ISSN： 1046-2023            Impact factor:   3.608


  20 in total

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Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

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Authors:  Hongbin Liu; Rovshan G Sadygov; John R Yates
Journal:  Anal Chem       Date:  2004-07-15       Impact factor: 6.986

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Journal:  Biotechniques       Date:  2004-02       Impact factor: 1.993

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Authors:  Javier Valdez-Taubas; Hugh Pelham
Journal:  EMBO J       Date:  2005-06-23       Impact factor: 11.598

Review 5.  Functions of lipid rafts in biological membranes.

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Journal:  Annu Rev Cell Dev Biol       Date:  1998       Impact factor: 13.827

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Journal:  Proc Natl Acad Sci U S A       Date:  1995-06-20       Impact factor: 11.205

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Authors:  J A Duncan; A G Gilman
Journal:  J Biol Chem       Date:  1998-06-19       Impact factor: 5.157

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Authors:  D Wessel; U I Flügge
Journal:  Anal Biochem       Date:  1984-04       Impact factor: 3.365

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Authors:  L A Camp; S L Hofmann
Journal:  J Biol Chem       Date:  1993-10-25       Impact factor: 5.157
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  15 in total

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Authors:  John P Wilson; Anuradha S Raghavan; Yu-Ying Yang; Guillaume Charron; Howard C Hang
Journal:  Mol Cell Proteomics       Date:  2010-11-14       Impact factor: 5.911

Review 2.  Proteomics of the Synapse--A Quantitative Approach to Neuronal Plasticity.

Authors:  Daniela C Dieterich; Michael R Kreutz
Journal:  Mol Cell Proteomics       Date:  2015-08-25       Impact factor: 5.911

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Journal:  Chem Biol Drug Des       Date:  2010-10-11       Impact factor: 2.817

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Authors:  Edward W Tate
Journal:  J Chem Biol       Date:  2008-05-09

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Authors:  Nikë Bharucha; Jun Ma; Craig J Dobry; Sarah K Lawson; Zhifen Yang; Anuj Kumar
Journal:  Mol Biol Cell       Date:  2008-04-16       Impact factor: 4.138

6.  Comparative analysis of S-fatty acylation of gel-separated proteins by stable isotope-coded fatty acid transmethylation and mass spectrometry.

Authors:  Linjie Dong; Jianjian Li; Lun Li; Tingting Li; Hongying Zhong
Journal:  Nat Protoc       Date:  2011-08-18       Impact factor: 13.491

7.  Nongradient blue native gel analysis of serum proteins and in-gel detection of serum esterase activities.

Authors:  Nopporn Thangthaeng; Nathalie Sumien; Michael J Forster; Ruchir A Shah; Liang-Jun Yan
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2010-12-31       Impact factor: 3.205

Review 8.  The chemical toolbox for monitoring protein fatty acylation and prenylation.

Authors:  Rami N Hannoush; Jinglucy Sun
Journal:  Nat Chem Biol       Date:  2010-07       Impact factor: 15.040

9.  Polycystin-1, the product of the polycystic kidney disease gene PKD1, is post-translationally modified by palmitoylation.

Authors:  Kasturi Roy; Ethan P Marin
Journal:  Mol Biol Rep       Date:  2018-08-02       Impact factor: 2.316

10.  Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes.

Authors:  Wei Yang; Dolores Di Vizio; Marc Kirchner; Hanno Steen; Michael R Freeman
Journal:  Mol Cell Proteomics       Date:  2009-10-02       Impact factor: 5.911
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