Literature DB >> 17009336

Contribution of gene expression to metabolic fluxes in hypermetabolic livers induced through burn injury and cecal ligation and puncture in rats.

Scott Banta1, Murali Vemula, Tadaaki Yokoyama, Arul Jayaraman, François Berthiaume, Martin L Yarmush.   

Abstract

Severe injury activates many stress-related and inflammatory pathways that can lead to a systemic hypermetabolic state. Prior studies using perfused hypermetabolic rat livers have identified intrinsic metabolic flux changes that were not dependent upon the continual presence of elevated stress hormones and substrate loads. We investigated the hypothesis that such changes may be due to persistent alterations in gene expression. A systemic hypermetabolic response was induced in rats by applying a moderate burn injury followed 2 days later by cecum ligation and puncture (CLP) to produce sepsis. Control animals received a sham-burn followed by CLP, or a sham-burn followed by sham-CLP. Two days after CLP, livers were analyzed for gene expression changes using DNA microarrays and for metabolism alterations by ex vivo perfusion coupled with Metabolic Flux Analysis. Burn injury prior to CLP increased fluxes while decreases in gene expression levels were observed. Conversely, CLP alone significantly increased metabolic gene expression, but decreased many of the corresponding metabolic fluxes. Burn injury combined with CLP led to the most dramatic changes, where concurrent changes in fluxes and gene expression levels occurred in about 1/3 of the reactions. The data are consistent with the notion that in this model, burn injury prior to CLP increased fluxes through post-translational mechanisms with little contribution of gene expression, while CLP treatment up-regulated the metabolic machinery by transcriptional mechanisms. Overall, these data show that mRNA changes measured at a single time point by DNA microarray analysis do not reliably predict metabolic flux changes in perfused livers. (c) 2006 Wiley Periodicals, Inc.

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Year:  2007        PMID: 17009336      PMCID: PMC3199956          DOI: 10.1002/bit.21200

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  57 in total

1.  Proteomic method identifies proteins nitrated in vivo during inflammatory challenge.

Authors:  K S Aulak; M Miyagi; L Yan; K A West; D Massillon; J W Crabb; D J Stuehr
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-02       Impact factor: 11.205

Review 2.  Metabolic engineering: advances in modeling and intervention in health and disease.

Authors:  Martin L Yarmush; Scott Banta
Journal:  Annu Rev Biomed Eng       Date:  2003       Impact factor: 9.590

3.  Metabolic flux analysis as a tool for the elucidation of the metabolism of neurotransmitter glutamate.

Authors:  Aristotle Chatziioannou; Georgios Palaiologos; Fragiskos N Kolisis
Journal:  Metab Eng       Date:  2003-07       Impact factor: 9.783

4.  Global expression profiling of acetate-grown Escherichia coli.

Authors:  Min-Kyu Oh; Lars Rohlin; Katy C Kao; James C Liao
Journal:  J Biol Chem       Date:  2002-01-28       Impact factor: 5.157

5.  Effects of dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury.

Authors:  Scott Banta; Tadaaki Yokoyama; François Berthiaume; Martin L Yarmush
Journal:  J Surg Res       Date:  2005-08       Impact factor: 2.192

6.  Metabolic flux analysis of cultured hepatocytes exposed to plasma.

Authors:  Christina Chan; François Berthiaume; Kyongbum Lee; Martin L Yarmush
Journal:  Biotechnol Bioeng       Date:  2003-01-05       Impact factor: 4.530

7.  The risk factors and time course of sepsis and organ dysfunction after burn trauma.

Authors:  John Fitzwater; Gary F Purdue; John L Hunt; Grant E O'Keefe
Journal:  J Trauma       Date:  2003-05

8.  Metabolic flux analysis of hepatocyte function in hormone- and amino acid-supplemented plasma.

Authors:  Christina Chan; François Berthiaume; Kyongbum Lee; Martin L Yarmush
Journal:  Metab Eng       Date:  2003-01       Impact factor: 9.783

Review 9.  Proteomics and systems biology approaches to signal transduction in sepsis.

Authors:  Anhco Nguyen; Michael B Yaffe
Journal:  Crit Care Med       Date:  2003-01       Impact factor: 7.598

10.  Profiling of dynamic changes in hypermetabolic livers.

Authors:  Kyongbum Lee; François Berthiaume; Gregory N Stephanopoulos; Martin L Yarmush
Journal:  Biotechnol Bioeng       Date:  2003-08-20       Impact factor: 4.530

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  19 in total

1.  Long-term dynamic profiling of inflammatory mediators in double-hit burn and sepsis animal models.

Authors:  Mehmet A Orman; Marianthi G Ierapetritou; Francois Berthiaume; Ioannis P Androulakis
Journal:  Cytokine       Date:  2012-03-07       Impact factor: 3.861

2.  Dynamic epistasis for different alleles of the same gene.

Authors:  Lin Xu; Brandon Barker; Zhenglong Gu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

3.  Metabolic response of perfused livers to various oxygenation conditions.

Authors:  Mehmet A Orman; Marianthi G Ierapetritou; Ioannis P Androulakis; Francois Berthiaume
Journal:  Biotechnol Bioeng       Date:  2011-08-04       Impact factor: 4.530

4.  Mechanistic identification of biofluid metabolite changes as markers of acetaminophen-induced liver toxicity in rats.

Authors:  Venkat R Pannala; Kalyan C Vinnakota; Kristopher D Rawls; Shanea K Estes; Tracy P O'Brien; Richard L Printz; Jason A Papin; Jaques Reifman; Masakazu Shiota; Jamey D Young; Anders Wallqvist
Journal:  Toxicol Appl Pharmacol       Date:  2019-04-08       Impact factor: 4.219

5.  Comparison of the cytokine and chemokine dynamics of the early inflammatory response in models of burn injury and infection.

Authors:  Mehmet A Orman; Tung T Nguyen; Marianthi G Ierapetritou; Francois Berthiaume; Ioannis P Androulakis
Journal:  Cytokine       Date:  2011-06-08       Impact factor: 3.861

6.  The dynamics of the early inflammatory response in double-hit burn and sepsis animal models.

Authors:  Mehmet A Orman; Marianthi G Ierapetritou; Francois Berthiaume; Ioannis P Androulakis
Journal:  Cytokine       Date:  2011-08-06       Impact factor: 3.861

Review 7.  Advanced stoichiometric analysis of metabolic networks of mammalian systems.

Authors:  Mehmet A Orman; Francois Berthiaume; Ioannis P Androulakis; Marianthi G Ierapetritou
Journal:  Crit Rev Biomed Eng       Date:  2011

8.  Pathway analysis of liver metabolism under stressed condition.

Authors:  Mehmet A Orman; Francois Berthiaume; Ioannis P Androulakis; Marianthi G Ierapetritou
Journal:  J Theor Biol       Date:  2010-12-14       Impact factor: 2.691

9.  Effects of burn injury on markers of hypermetabolism in rats.

Authors:  Maria-Louisa Izamis; Korkut Uygun; Basak Uygun; Martin L Yarmush; François Berthiaume
Journal:  J Burn Care Res       Date:  2009 Nov-Dec       Impact factor: 1.845

10.  Burn trauma disrupts circadian rhythms in rat liver.

Authors:  Rohit Rao; Qian Yang; Mehmet A Orman; Francois Berthiaume; Marianthi G Ierapetritou; Ioannis P Androulakis
Journal:  Int J Burns Trauma       Date:  2016-06-01
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