Literature DB >> 17005760

Simultaneous amplification and identification of 25 human papillomavirus types with Templex technology.

Jian Han1, David C Swan, Sharon J Smith, Shanjuan H Lum, Susan E Sefers, Elizabeth R Unger, Yi-Wei Tang.   

Abstract

The majority of existing human papillomavirus (HPV) genotyping assays are based on multiplex PCR using consensus or degenerate primers. We developed a Templex HPV assay that simultaneously detects and identifies 25 common HPV genotypes in a single-tube reaction using type-specific primers for the HPV-specific E6 and E7 genes. The analytical sensitivities of the Templex assay for HPV type 16 (HPV-16), -18, and -56 were 20, 100, and 20 copies per reaction mixture, respectively. The Templex assay provides semiquantitative information on each type when multiple HPV types coexist in one reaction. We tested 109 clinical cervical specimens previously evaluated with the Digene HC2 high-risk HPV DNA test and found 95.4% concordance between the assay results. The Templex assay provided type-specific results and found multiple types in 29.2% (14 of 48) of high-risk HPV-positive samples. The entire Templex procedure, including DNA extraction, can be completed within 5 hours, providing a rapid and reliable diagnostic tool for HPV detection and typing that is amenable to automation.

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Year:  2006        PMID: 17005760      PMCID: PMC1698316          DOI: 10.1128/JCM.01762-06

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  23 in total

1.  A new PCR-based assay amplifies the E6-E7 genes of most mucosal human papillomaviruses (HPV).

Authors:  T Sasagawa; Y Minemoto; W Basha; H Yamazaki; M Nakamura; H Yoshimoto; J Sakaike; M Inoue
Journal:  Virus Res       Date:  2000-04       Impact factor: 3.303

2.  Improved amplification of genital human papillomaviruses.

Authors:  P E Gravitt; C L Peyton; T Q Alessi; C M Wheeler; F Coutlée; A Hildesheim; M H Schiffman; D R Scott; R J Apple
Journal:  J Clin Microbiol       Date:  2000-01       Impact factor: 5.948

3.  Detection of human papillomaviruses in cervical neoplasias using multiple sets of generic polymerase chain reaction primers.

Authors:  S Kado; Y Kawamata; Y Shino; T Kasai; K Kubota; H Iwasaki; I Fukazawa; H Takano; T Nunoyama; A Mitsuhashi; S Sekiya; H Shirasawa
Journal:  Gynecol Oncol       Date:  2001-04       Impact factor: 5.482

4.  GP5+/6+ PCR followed by reverse line blot analysis enables rapid and high-throughput identification of human papillomavirus genotypes.

Authors:  Adriaan J C van den Brule; René Pol; Nathalie Fransen-Daalmeijer; Leo M Schouls; Chris J L M Meijer; Peter J F Snijders
Journal:  J Clin Microbiol       Date:  2002-03       Impact factor: 5.948

Review 5.  The causal relation between human papillomavirus and cervical cancer.

Authors:  F X Bosch; A Lorincz; N Muñoz; C J L M Meijer; K V Shah
Journal:  J Clin Pathol       Date:  2002-04       Impact factor: 3.411

6.  High-risk and multiple human papillomavirus infections associated with cervical abnormalities in Japanese women.

Authors:  T Sasagawa; W Basha; H Yamazaki; M Inoue
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2001-01       Impact factor: 4.254

7.  Evaluation of a Digene-recommended algorithm for human papillomavirus low-positive results present in a "retest zone".

Authors:  Kenneth L Muldrew; Safedin H Beqaj; Jian Han; Shanjuan H Lum; Vicki Clinard; Stephen J Schultenover; Yi-Wei Tang
Journal:  Am J Clin Pathol       Date:  2007-01       Impact factor: 2.493

Review 8.  Current methods of testing for human papillomavirus.

Authors:  P Davies; J Kornegay; T Iftner
Journal:  Best Pract Res Clin Obstet Gynaecol       Date:  2001-10       Impact factor: 5.237

9.  Human papillomavirus type 16 status in cervical carcinoma cell DNA assayed by multiplex PCR.

Authors:  Krzysztof Lukaszuk; Joanna Liss; Izabela Wozniak; Janusz Emerich; Czesław Wójcikowski
Journal:  J Clin Microbiol       Date:  2003-02       Impact factor: 5.948

10.  Epidemiologic classification of human papillomavirus types associated with cervical cancer.

Authors:  Nubia Muñoz; F Xavier Bosch; Silvia de Sanjosé; Rolando Herrero; Xavier Castellsagué; Keerti V Shah; Peter J F Snijders; Chris J L M Meijer
Journal:  N Engl J Med       Date:  2003-02-06       Impact factor: 91.245

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  43 in total

Review 1.  Microbe hunting.

Authors:  W Ian Lipkin
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

2.  MVPlex assay for direct detection of methicillin-resistant Staphylococcus aureus in naris and other swab specimens.

Authors:  Raymond P Podzorski; Haijing Li; Jian Han; Yi-Wei Tang
Journal:  J Clin Microbiol       Date:  2008-07-09       Impact factor: 5.948

Review 3.  Basic concepts of microarrays and potential applications in clinical microbiology.

Authors:  Melissa B Miller; Yi-Wei Tang
Journal:  Clin Microbiol Rev       Date:  2009-10       Impact factor: 26.132

4.  A universal method for the identification of bacteria based on general PCR primers.

Authors:  Sameer A Barghouthi
Journal:  Indian J Microbiol       Date:  2011-02-19       Impact factor: 2.461

5.  Development and evaluation of a liquid bead microarray assay for genotyping genital human papillomaviruses.

Authors:  Qinghua Feng; Stephen Cherne; Rachel L Winer; Akhila Balasubramanian; Shu-Kuang Lee; Stephen E Hawes; Nancy B Kiviat; Laura A Koutsky
Journal:  J Clin Microbiol       Date:  2009-01-14       Impact factor: 5.948

6.  High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.

Authors:  Chunlin Wang; Catherine M Sanders; Qunying Yang; Harry W Schroeder; Elijah Wang; Farbod Babrzadeh; Baback Gharizadeh; Richard M Myers; James R Hudson; Ronald W Davis; Jian Han
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

7.  Multiple human papillomavirus infections with high viral loads are associated with cervical lesions but do not differentiate grades of cervical abnormalities.

Authors:  Markus Schmitt; Christophe Depuydt; Ina Benoy; Johannes Bogers; Jerome Antoine; Marc Arbyn; Michael Pawlita
Journal:  J Clin Microbiol       Date:  2013-02-27       Impact factor: 5.948

8.  Prevalence of and molecular basis for tuberculosis drug resistance in the Republic of Georgia: validation of a QIAplex system for detection of drug resistance-related mutations.

Authors:  Medea Gegia; Nino Mdivani; Rodrigo E Mendes; Haijing Li; Maka Akhalaia; Jian Han; George Khechinashvili; Yi-Wei Tang
Journal:  Antimicrob Agents Chemother       Date:  2007-12-10       Impact factor: 5.191

9.  Abundance of multiple high-risk human papillomavirus (HPV) infections found in cervical cells analyzed by use of an ultrasensitive HPV genotyping assay.

Authors:  Markus Schmitt; Bolormaa Dondog; Tim Waterboer; Michael Pawlita; Massimo Tommasino; Tarik Gheit
Journal:  J Clin Microbiol       Date:  2009-10-28       Impact factor: 5.948

10.  Genotyping of human papillomaviruses by a novel one-step typing method with multiplex PCR and clinical applications.

Authors:  Morie Nishiwaki; Tomohiro Yamamoto; Somako Tone; Taichi Murai; Tatsuya Ohkawara; Takakuni Matsunami; Motoiki Koizumi; Yoshitake Takagi; Jun Yamaguchi; Nobuo Kondo; Jun Nishihira; Takeharu Horikawa; Takashi Yoshiki
Journal:  J Clin Microbiol       Date:  2008-01-30       Impact factor: 5.948

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