Literature DB >> 17002293

Putidaredoxin-to-cytochrome P450cam electron transfer: differences between the two reductive steps required for catalysis.

Vadim Yu Kuznetsov1, Thomas L Poulos, Irina F Sevrioukova.   

Abstract

Cytochrome P450cam (P450cam) is the terminal monooxygenase in a three-component camphor-hydroxylating system from Pseudomonas putida. The reaction cycle requires two distinct electron transfer (ET) processes from the [2Fe-2S] containing putidaredoxin (Pdx) to P450cam. Even though the mechanism of interaction and ET between the two proteins has been under investigation for over 30 years, the second reductive step and the effector role of Pdx are not fully understood. We utilized mutagenesis, kinetic, and computer modeling approaches to better understand differences between the two Pdx-to-P450cam ET events. Our results indicate that interacting residues and the ET pathways in the complexes formed between reduced Pdx (Pdx(r)) and the ferric and ferrous dioxygen-bound forms of P450cam (oxy-P450cam) are different. Pdx Asp38 and Trp106 were found to be key players in both reductive steps. Compared to the wild-type Pdx, the D38A, W106A, and delta106 mutants exhibited considerably higher Kd values for ferric P450cam and retained ca. 20% of the first electron transferring ability. In contrast, the binding affinity of the mutants for oxy-P450cam was not substantially altered while the second ET rates were <1%. On the basis of the kinetic and modeling data we conclude that (i) P450cam-Pdx interaction is highly specific in part because it is guided/controlled by the redox state of both partners; (ii) there are alternative ET routes from Pdx(r) to ferric P450cam and a unique pathway to oxy-P450cam involving Asp38; (iii) Pdx Trp106 is a key structural element that couples the second ET event to product formation possibly via its "push" effect on the heme-binding loop.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17002293      PMCID: PMC2533851          DOI: 10.1021/bi0611154

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  66 in total

1.  A thermodynamic model of regulation: modulation of redox equilibria in camphor monoxygenase.

Authors:  S G Sligar; I C Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  1976-04       Impact factor: 11.205

2.  Redox-dependent structural differences in putidaredoxin derived from homologous structure refinement via residual dipolar couplings.

Authors:  Nitin U Jain; Elina Tjioe; Alon Savidor; James Boulie
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

3.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

4.  A structure-based model for cytochrome P450cam-putidaredoxin interactions.

Authors:  T C Pochapsky; T A Lyons; S Kazanis; T Arakaki; G Ratnaswamy
Journal:  Biochimie       Date:  1996       Impact factor: 4.079

5.  Crystallographic study on the dioxygen complex of wild-type and mutant cytochrome P450cam. Implications for the dioxygen activation mechanism.

Authors:  Shingo Nagano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

6.  Dispersed polaron simulations of electron transfer in photosynthetic reaction centers.

Authors:  A Warshel; Z T Chu; W W Parson
Journal:  Science       Date:  1989-10-06       Impact factor: 47.728

7.  The cytochrome P-450cam binding surface as defined by site-directed mutagenesis and electrostatic modeling.

Authors:  P S Stayton; S G Sligar
Journal:  Biochemistry       Date:  1990-08-14       Impact factor: 3.162

8.  Roles of the axial push effect in cytochrome P450cam studied with the site-directed mutagenesis at the heme proximal site.

Authors:  S Yoshioka; S Takahashi; K Ishimori; I Morishima
Journal:  J Inorg Biochem       Date:  2000-08-31       Impact factor: 4.155

9.  Redox-dependent structural reorganization in putidaredoxin, a vertebrate-type [2Fe-2S] ferredoxin from Pseudomonas putida.

Authors:  Irina F Sevrioukova
Journal:  J Mol Biol       Date:  2005-04-01       Impact factor: 5.469

10.  Crystal structure of putidaredoxin, the [2Fe-2S] component of the P450cam monooxygenase system from Pseudomonas putida.

Authors:  Irina F Sevrioukova; Carlos Garcia; Huiying Li; B Bhaskar; Thomas L Poulos
Journal:  J Mol Biol       Date:  2003-10-17       Impact factor: 5.469

View more
  26 in total

1.  Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.

Authors:  Wen Yang; Stephen G Bell; Hui Wang; Weihong Zhou; Nicola Hoskins; Alison Dale; Mark Bartlam; Luet-Lok Wong; Zihe Rao
Journal:  J Biol Chem       Date:  2010-06-24       Impact factor: 5.157

2.  Unexpected Differences between Two Closely Related Bacterial P450 Camphor Monooxygenases.

Authors:  Vidhi C Murarka; Dipanwita Batabyal; Jose A Amaya; Irina F Sevrioukova; Thomas L Poulos
Journal:  Biochemistry       Date:  2020-07-15       Impact factor: 3.162

3.  Cluster-Dependent Charge-Transfer Dynamics in Iron-Sulfur Proteins.

Authors:  Ziliang Mao; Shu-Hao Liou; Nimesh Khadka; Francis E Jenney; David B Goodin; Lance C Seefeldt; Michael W W Adams; Stephen P Cramer; Delmar S Larsen
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

4.  Crystal structure of the putidaredoxin reductase x putidaredoxin electron transfer complex.

Authors:  Irina F Sevrioukova; Thomas L Poulos; Inna Y Churbanova
Journal:  J Biol Chem       Date:  2010-02-23       Impact factor: 5.157

5.  Delicate conformational balance of the redox enzyme cytochrome P450cam.

Authors:  Simon P Skinner; Wei-Min Liu; Yoshitaka Hiruma; Monika Timmer; Anneloes Blok; Mathias A S Hass; Marcellus Ubbink
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-30       Impact factor: 11.205

Review 6.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 7.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

8.  Effect of redox partner binding on CYP101D1 conformational dynamics.

Authors:  Dipanwita Batabyal; Thomas L Poulos
Journal:  J Inorg Biochem       Date:  2018-03-01       Impact factor: 4.155

9.  Protein recognition in ferredoxin-P450 electron transfer in the class I CYP199A2 system from Rhodopseudomonas palustris.

Authors:  Stephen G Bell; Feng Xu; Eachan O D Johnson; Ian M Forward; Mark Bartlam; Zihe Rao; Luet-Lok Wong
Journal:  J Biol Inorg Chem       Date:  2009-11-11       Impact factor: 3.358

10.  Crystal structure of CYP24A1, a mitochondrial cytochrome P450 involved in vitamin D metabolism.

Authors:  Andrew J Annalora; David B Goodin; Wen-Xu Hong; Qinghai Zhang; Eric F Johnson; C David Stout
Journal:  J Mol Biol       Date:  2009-12-01       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.