Literature DB >> 16997963

Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens.

Sadanari Jindou1, Ilya Borovok, Marco T Rincon, Harry J Flint, Dionysios A Antonopoulos, Margret E Berg, Bryan A White, Edward A Bayer, Raphael Lamed.   

Abstract

A 17-kb scaffoldin gene cluster in Ruminococcus flavefaciens strain FD-1 was compared with the homologous segment published for strain 17. Although the general design of the cluster is identical in the two strains, significant differences in the modular architecture of the scaffoldin proteins were discovered, implying strain-specific divergence in cellulosome organization.

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Year:  2006        PMID： 16997963      PMCID： PMC1636321          DOI： 10.1128/JB.00973-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  18 in total

Review 1.  Cellulase, clostridia, and ethanol.

Authors:  Arnold L Demain; Michael Newcomb; J H David Wu
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

Review 2.  The rumen microbial ecosystem--some recent developments.

Authors:  H J Flint
Journal:  Trends Microbiol       Date:  1997-12       Impact factor: 17.079

3.  Molecular cloning of genes from Ruminococcus flavefaciens encoding xylanase and beta(1-3,1-4)glucanase activities.

Authors:  H J Flint; C A McPherson; J Bisset
Journal:  Appl Environ Microbiol       Date:  1989-05       Impact factor: 4.792

4.  16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep.

Authors:  Denis O Krause; Brian P Dalrymple; Wendy J Smith; Roderick I Mackie; Christopher S McSweeney
Journal:  Microbiology       Date:  1999-07       Impact factor: 2.777

5.  Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens.

Authors:  S Y Ding; M T Rincon; R Lamed; J C Martin; S I McCrae; V Aurilia; Y Shoham; E A Bayer; H J Flint
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

6.  EndB, a multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R. flavefaciens protein via a dockerin domain.

Authors:  M T Rincón; S I McCrae; J Kirby; K P Scott; H J Flint
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

7.  Novel organization and divergent dockerin specificities in the cellulosome system of Ruminococcus flavefaciens.

Authors:  Marco T Rincon; Shi-You Ding; Sheila I McCrae; Jennifer C Martin; Vincenzo Aurilia; Raphael Lamed; Yuval Shoham; Edward A Bayer; Harry J Flint
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

8.  The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects.

Authors:  Céline Robert; Annick Bernalier-Donadille
Journal:  FEMS Microbiol Ecol       Date:  2003-10-01       Impact factor: 4.194

9.  Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization.

Authors:  Dionysios A Antonopoulos; Karen E Nelson; Mark Morrison; Bryan A White
Journal:  Environ Microbiol       Date:  2004-04       Impact factor: 5.491

10.  ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome.

Authors:  Marco T Rincón; Jennifer C Martin; Vincenzo Aurilia; Sheila I McCrae; Garry J Rucklidge; Martin D Reid; Edward A Bayer; Raphael Lamed; Harry J Flint
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490
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  22 in total

1.  Preliminary X-ray characterization of a novel type of anchoring cohesin from the cellulosome of Ruminococcus flavefaciens.

Authors:  Orly Alber; Ilit Noach; Raphael Lamed; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-01-18

Review 2.  Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides.

Authors:  Lior Artzi; Edward A Bayer; Sarah Moraïs
Journal:  Nat Rev Microbiol       Date:  2016-12-12       Impact factor: 60.633

3.  Atypical cohesin-dockerin complex responsible for cell surface attachment of cellulosomal components: binding fidelity, promiscuity, and structural buttresses.

Authors:  Orly Salama-Alber; Maroor K Jobby; Seth Chitayat; Steven P Smith; Bryan A White; Linda J W Shimon; Raphael Lamed; Felix Frolow; Edward A Bayer
Journal:  J Biol Chem       Date:  2013-04-11       Impact factor: 5.157

4.  Characterization of the Gut Microbiota in Six Geographical Populations of Chinese Rhesus Macaques (Macaca mulatta), Implying an Adaptation to High-Altitude Environment.

Authors:  Junsong Zhao; Yongfang Yao; Diyan Li; Huaming Xu; Jiayun Wu; Anxiang Wen; Meng Xie; Qingyong Ni; Mingwang Zhang; Guangneng Peng; Huailiang Xu
Journal:  Microb Ecol       Date:  2018-01-25       Impact factor: 4.552

5.  A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens.

Authors:  Marco T Rincon; Tadej Cepeljnik; Jennifer C Martin; Yoav Barak; Raphael Lamed; Edward A Bayer; Harry J Flint
Journal:  J Bacteriol       Date:  2007-04-27       Impact factor: 3.490

6.  Expression, purification, crystallization and preliminary X-ray analysis of CttA, a putative cellulose-binding protein from Ruminococcus flavefaciens.

Authors:  Immacolata Venditto; Pedro Bule; Andrew Thompson; Juan Sanchez-Weatherby; James Sandy; Luis M A Ferreira; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-22       Impact factor: 1.056

7.  Crystallization and preliminary X-ray characterization of a type III cohesin-dockerin complex from the cellulosome system of Ruminococcus flavefaciens.

Authors:  Orly Salama-Alber; Yair Gat; Raphael Lamed; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-08-31

Review 8.  Microbial degradation of complex carbohydrates in the gut.

Authors:  Harry J Flint; Karen P Scott; Sylvia H Duncan; Petra Louis; Evelyne Forano
Journal:  Gut Microbes       Date:  2012-05-10

9.  Crystal structure of an uncommon cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases.

Authors:  Maly Levy-Assaraf; Milana Voronov-Goldman; Inna Rozman Grinberg; Gloria Weiserman; Linda J W Shimon; Sadanari Jindou; Ilya Borovok; Bryan A White; Edward A Bayer; Raphael Lamed; Felix Frolow
Journal:  PLoS One       Date:  2013-02-14       Impact factor: 3.240

10.  Expression of cellulosome components and type IV pili within the extracellular proteome of Ruminococcus flavefaciens 007.

Authors:  Maša Vodovnik; Sylvia H Duncan; Martin D Reid; Louise Cantlay; Keith Turner; Julian Parkhill; Raphael Lamed; Carl J Yeoman; Margret E Berg Miller; Bryan A White; Edward A Bayer; Romana Marinšek-Logar; Harry J Flint
Journal:  PLoS One       Date:  2013-06-04       Impact factor: 3.240
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