Literature DB >> 22949209

Crystallization and preliminary X-ray characterization of a type III cohesin-dockerin complex from the cellulosome system of Ruminococcus flavefaciens.

Orly Salama-Alber1, Yair Gat, Raphael Lamed, Linda J W Shimon, Edward A Bayer, Felix Frolow.   

Abstract

In Ruminococcus flavefaciens, a predominant fibre-degrading bacterium found in ruminants, cellulosomal proteins are anchored to the bacterial cell wall through a relatively small ScaE scaffoldin which includes a single type III cohesin. The cotton-binding protein CttA consists of two cellulose-binding modules and a C-terminal modular pair (XDoc) comprising an X-module and a contiguous dockerin, which exhibits high affinity towards the ScaE cohesin. Seleno-L-methionine-labelled derivatives of the ScaE cohesin module and the XDoc from CttA have been expressed, copurified and cocrystallized. The crystals belonged to the tetragonal space group P4(3)2(1)2, with unit-cell parameters a = b = 78.7, c = 203.4 Å, and the unit cell contains a single cohesin-XDoc complex in the asymmetric unit. The diffraction data were phased to 2.0 Å resolution using the anomalous signal of the Se atoms.

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Year:  2012        PMID: 22949209      PMCID: PMC3433212          DOI: 10.1107/S1744309112033088

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  33 in total

1.  Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex.

Authors:  Ana L Carvalho; Fernando M V Dias; José A M Prates; Tibor Nagy; Harry J Gilbert; Gideon J Davies; Luís M A Ferreira; Maria J Romão; Carlos M G A Fontes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-17       Impact factor: 11.205

Review 2.  The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides.

Authors:  Edward A Bayer; Jean-Pierre Belaich; Yuval Shoham; Raphael Lamed
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 15.500

3.  Insights into higher-order organization of the cellulosome revealed by a dissect-and-build approach: crystal structure of interacting Clostridium thermocellum multimodular components.

Authors:  Jarrett J Adams; Mark A Currie; Sabrina Ali; Edward A Bayer; Zongchao Jia; Steven P Smith
Journal:  J Mol Biol       Date:  2010-01-11       Impact factor: 5.469

4.  Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum.

Authors:  V Julliand; A de Vaux; L Millet; G Fonty
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

5.  The Phenix software for automated determination of macromolecular structures.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Swati Jain; Gary J Kapral; Ralf W Grosse Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Methods       Date:  2011-07-29       Impact factor: 3.608

6.  Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens.

Authors:  S Y Ding; M T Rincon; R Lamed; J C Martin; S I McCrae; V Aurilia; Y Shoham; E A Bayer; H J Flint
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Cohesin diversity revealed by the crystal structure of the anchoring cohesin from Ruminococcus flavefaciens.

Authors:  Orly Alber; Ilit Noach; Marco T Rincon; Harry J Flint; Linda J W Shimon; Raphael Lamed; Felix Frolow; Edward A Bayer
Journal:  Proteins       Date:  2009-11-15

9.  Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche.

Authors:  Karen E Nelson; Stephen H Zinder; Ioana Hance; Patrick Burr; David Odongo; Delia Wasawo; Agnes Odenyo; Richard Bishop
Journal:  Environ Microbiol       Date:  2003-11       Impact factor: 5.491

10.  Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

Authors:  Marco T Rincon; Bareket Dassa; Harry J Flint; Anthony J Travis; Sadanari Jindou; Ilya Borovok; Raphael Lamed; Edward A Bayer; Bernard Henrissat; Pedro M Coutinho; Dion A Antonopoulos; Margret E Berg Miller; Bryan A White
Journal:  PLoS One       Date:  2010-08-30       Impact factor: 3.240

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  2 in total

1.  Atypical cohesin-dockerin complex responsible for cell surface attachment of cellulosomal components: binding fidelity, promiscuity, and structural buttresses.

Authors:  Orly Salama-Alber; Maroor K Jobby; Seth Chitayat; Steven P Smith; Bryan A White; Linda J W Shimon; Raphael Lamed; Felix Frolow; Edward A Bayer
Journal:  J Biol Chem       Date:  2013-04-11       Impact factor: 5.157

2.  Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.

Authors:  Vered Israeli-Ruimy; Pedro Bule; Sadanari Jindou; Bareket Dassa; Sarah Moraïs; Ilya Borovok; Yoav Barak; Michal Slutzki; Yuval Hamberg; Vânia Cardoso; Victor D Alves; Shabir Najmudin; Bryan A White; Harry J Flint; Harry J Gilbert; Raphael Lamed; Carlos M G A Fontes; Edward A Bayer
Journal:  Sci Rep       Date:  2017-02-10       Impact factor: 4.379

  2 in total

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