Literature DB >> 16986620

Use and abuse of the quasi-steady-state approximation.

E H Flach1, S Schnell.   

Abstract

The transient kinetic behaviour of an open single enzyme, single substrate reaction is examined. The reaction follows the Van Slyke-Cullen mechanism, a spacial case of the Michaelis-Menten reaction. The analysis is performed both with and without applying the quasi-steady-state approximation. The analysis of the full system shows conditions for biochemical pathway coupling, which yield sustained oscillatory behaviour in the enzyme reaction. The reduced model does not demonstrate this behaviour. The results have important implications in the analysis of open biochemical reactions and the modelling of metabolic systems.

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Year:  2006        PMID: 16986620      PMCID: PMC2265107          DOI: 10.1049/ip-syb:20050104

Source DB:  PubMed          Journal:  Syst Biol (Stevenage)        ISSN: 1741-2471


  11 in total

1.  Enzyme kinetics at high enzyme concentration.

Authors:  S Schnell; P K Maini
Journal:  Bull Math Biol       Date:  2000-05       Impact factor: 1.758

2.  The effect of slow allosteric transitions in a coupled biochemical oscillator model.

Authors:  M Kaern; A Hunding
Journal:  J Theor Biol       Date:  1999-05-21       Impact factor: 2.691

3.  Quasi-steady state assumptions for non-isolated enzyme-catalysed reactions.

Authors:  I Stoleriu; F A Davidson; J L Liu
Journal:  J Math Biol       Date:  2003-08-20       Impact factor: 2.259

Review 4.  Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws.

Authors:  S Schnell; T E Turner
Journal:  Prog Biophys Mol Biol       Date:  2004 Jun-Jul       Impact factor: 3.667

Review 5.  Mathematical and computational techniques to deduce complex biochemical reaction mechanisms.

Authors:  E J Crampin; S Schnell; P E McSharry
Journal:  Prog Biophys Mol Biol       Date:  2004-09       Impact factor: 3.667

6.  Effects of periodic input on the quasi-steady state assumptions for enzyme-catalysed reactions.

Authors:  I Stoleriu; F A Davidson; J L Liu
Journal:  J Math Biol       Date:  2004-08-20       Impact factor: 2.259

7.  The condition for pseudo-first-order kinetics in enzymatic reactions is independent of the initial enzyme concentration.

Authors:  S Schnell; C Mendoza
Journal:  Biophys Chem       Date:  2004-02-01       Impact factor: 2.352

8.  Slowly reverting enzyme inactivation: a mechanism for generating long-lived damped oscillations

Authors: 
Journal:  J Theor Biol       Date:  1998-11-21       Impact factor: 2.691

9.  A new class of biochemical oscillator models based on competitive binding.

Authors:  L G Ngo; M R Roussel
Journal:  Eur J Biochem       Date:  1997-04-01

10.  On the validity of the steady state assumption of enzyme kinetics.

Authors:  L A Segel
Journal:  Bull Math Biol       Date:  1988       Impact factor: 1.758

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  16 in total

1.  Unraveling the complex regulatory relationships between metabolism and signal transduction in cancer.

Authors:  Michelle L Wynn; Sofia D Merajver; Santiago Schnell
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

2.  Stability of open pathways.

Authors:  Edward H Flach; Santiago Schnell
Journal:  Math Biosci       Date:  2010-09-26       Impact factor: 2.144

3.  Analysis of a predator-prey model with specific time scales: a geometrical approach proving the occurrence of canard solutions.

Authors:  Jean-Christophe Poggiale; Clément Aldebert; Benjamin Girardot; Bob W Kooi
Journal:  J Math Biol       Date:  2019-02-20       Impact factor: 2.259

4.  How the formation of amyloid plaques and neurofibrillary tangles may be related: a mathematical modelling study.

Authors:  I A Kuznetsov; A V Kuznetsov
Journal:  Proc Math Phys Eng Sci       Date:  2018-02-07       Impact factor: 2.704

5.  Mathematical modeling of the dynamic storage of iron in ferritin.

Authors:  J Cristian Salgado; Alvaro Olivera-Nappa; Ziomara P Gerdtzen; Victoria Tapia; Elizabeth C Theil; Carlos Conca; Marco T Nuñez
Journal:  BMC Syst Biol       Date:  2010-11-03

6.  Balanced truncation for model reduction of biological oscillators.

Authors:  Alberto Padoan; Fulvio Forni; Rodolphe Sepulchre
Journal:  Biol Cybern       Date:  2021-08-12       Impact factor: 2.086

7.  Towards the rational design of synthetic cells with prescribed population dynamics.

Authors:  Neil Dalchau; Matthew J Smith; Samuel Martin; James R Brown; Stephen Emmott; Andrew Phillips
Journal:  J R Soc Interface       Date:  2012-06-08       Impact factor: 4.118

8.  A method for zooming of nonlinear models of biochemical systems.

Authors:  Mikael Sunnåker; Gunnar Cedersund; Mats Jirstrand
Journal:  BMC Syst Biol       Date:  2011-09-07

9.  Methods of Model Reduction for Large-Scale Biological Systems: A Survey of Current Methods and Trends.

Authors:  Thomas J Snowden; Piet H van der Graaf; Marcus J Tindall
Journal:  Bull Math Biol       Date:  2017-06-27       Impact factor: 1.758

10.  On the quasi-steady-state approximation in an open Michaelis-Menten reaction mechanism.

Authors:  Justin Eilertsen; Marc R Roussel; Santiago Schnell; Sebastian Walcher
Journal:  AIMS Math       Date:  2021-04-21
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