Literature DB >> 16980956

Symbiosis insights through metagenomic analysis of a microbial consortium.

Tanja Woyke1, Hanno Teeling, Natalia N Ivanova, Marcel Huntemann, Michael Richter, Frank Oliver Gloeckner, Dario Boffelli, Iain J Anderson, Kerrie W Barry, Harris J Shapiro, Ernest Szeto, Nikos C Kyrpides, Marc Mussmann, Rudolf Amann, Claudia Bergin, Caroline Ruehland, Edward M Rubin, Nicole Dubilier.   

Abstract

Symbioses between bacteria and eukaryotes are ubiquitous, yet our understanding of the interactions driving these associations is hampered by our inability to cultivate most host-associated microbes. Here we use a metagenomic approach to describe four co-occurring symbionts from the marine oligochaete Olavius algarvensis, a worm lacking a mouth, gut and nephridia. Shotgun sequencing and metabolic pathway reconstruction revealed that the symbionts are sulphur-oxidizing and sulphate-reducing bacteria, all of which are capable of carbon fixation, thus providing the host with multiple sources of nutrition. Molecular evidence for the uptake and recycling of worm waste products by the symbionts suggests how the worm could eliminate its excretory system, an adaptation unique among annelid worms. We propose a model that describes how the versatile metabolism within this symbiotic consortium provides the host with an optimal energy supply as it shuttles between the upper oxic and lower anoxic coastal sediments that it inhabits.

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Year:  2006        PMID: 16980956     DOI: 10.1038/nature05192

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  182 in total

1.  Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use.

Authors:  Manuel Kleiner; Cecilia Wentrup; Christian Lott; Hanno Teeling; Silke Wetzel; Jacque Young; Yun-Juan Chang; Manesh Shah; Nathan C VerBerkmoes; Jan Zarzycki; Georg Fuchs; Stephanie Markert; Kristina Hempel; Birgit Voigt; Dörte Becher; Manuel Liebeke; Michael Lalk; Dirk Albrecht; Michael Hecker; Thomas Schweder; Nicole Dubilier
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-18       Impact factor: 11.205

2.  Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

Authors:  Frank O Aylward; Kristin E Burnum; Jarrod J Scott; Garret Suen; Susannah G Tringe; Sandra M Adams; Kerrie W Barry; Carrie D Nicora; Paul D Piehowski; Samuel O Purvine; Gabriel J Starrett; Lynne A Goodwin; Richard D Smith; Mary S Lipton; Cameron R Currie
Journal:  ISME J       Date:  2012-03-01       Impact factor: 10.302

3.  A global network of coexisting microbes from environmental and whole-genome sequence data.

Authors:  Samuel Chaffron; Hubert Rehrauer; Jakob Pernthaler; Christian von Mering
Journal:  Genome Res       Date:  2010-05-10       Impact factor: 9.043

4.  Beneficial effect of Verminephrobacter nephridial symbionts on the fitness of the earthworm Aporrectodea tuberculata.

Authors:  Marie B Lund; Martin Holmstrup; Bente A Lomstein; Christian Damgaard; Andreas Schramm
Journal:  Appl Environ Microbiol       Date:  2010-05-28       Impact factor: 4.792

5.  Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics.

Authors:  Marc Weber; Hanno Teeling; Sixing Huang; Jost Waldmann; Mariette Kassabgy; Bernhard M Fuchs; Anna Klindworth; Christine Klockow; Antje Wichels; Gunnar Gerdts; Rudolf Amann; Frank Oliver Glöckner
Journal:  ISME J       Date:  2010-12-16       Impact factor: 10.302

6.  Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.

Authors:  Wei Xie; Fengping Wang; Lei Guo; Zeling Chen; Stefan M Sievert; Jun Meng; Guangrui Huang; Yuxin Li; Qingyu Yan; Shan Wu; Xin Wang; Shangwu Chen; Guangyuan He; Xiang Xiao; Anlong Xu
Journal:  ISME J       Date:  2010-10-07       Impact factor: 10.302

7.  An interdependent metabolic patchwork in the nested symbiosis of mealybugs.

Authors:  John P McCutcheon; Carol D von Dohlen
Journal:  Curr Biol       Date:  2011-08-11       Impact factor: 10.834

Review 8.  Dietary conjugated linoleic acid and n-3 polyunsaturated fatty acids in inflammatory bowel disease.

Authors:  Josep Bassaganya-Riera; Raquel Hontecillas
Journal:  Curr Opin Clin Nutr Metab Care       Date:  2010-09       Impact factor: 4.294

9.  Metagenomics: Facts and Artifacts, and Computational Challenges*

Authors:  John C Wooley; Yuzhen Ye
Journal:  J Comput Sci Technol       Date:  2009-01       Impact factor: 1.571

Review 10.  Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems.

Authors:  Jing Yuan; Patrick O'Donoghue; Alex Ambrogelly; Sarath Gundllapalli; R Lynn Sherrer; Sotiria Palioura; Miljan Simonović; Dieter Söll
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

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