| Literature DB >> 16966091 |
Duanping Liao1, Donna J Peuquet, Yinkang Duan, Eric A Whitsel, Jianwei Dou, Richard L Smith, Hung-Mo Lin, Jiu-Chiuan Chen, Gerardo Heiss.
Abstract
Spatial estimations are increasingly used to estimate geocoded ambient particulate matter (PM) concentrations in epidemiologic studies because measures of daily PM concentrations are unavailable in most U.S. locations. This study was conducted to a) assess the feasibility of large-scale kriging estimations of daily residential-level ambient PM concentrations, b) perform and compare cross-validations of different kriging models, c) contrast three popular kriging approaches, and d) calculate SE of the kriging estimations. We used PM data for PM with aerodynamic diameter </= 10 microm (PM10) and aerodynamic diameter </= 2.5 microm (PM2.5) from the U.S. Environmental Protection Agency for the year 2000. Kriging estimations were performed at 94,135 geocoded addresses of Women's Health Initiative study participants using the ArcView geographic information system. We developed a semiautomated program to enable large-scale daily kriging estimation and assessed validity of semivariogram models using prediction error (PE) , standardized prediction error (SPE) , root mean square standardized (RMSS) , and SE of the estimated PM. National- and regional-scale kriging performed satisfactorily, with the former slightly better. The average PE, SPE, and RMSS of daily PM10 semivariograms using regular ordinary kriging with a spherical model were 0.0629, -0.0011, and 1.255 microg/m3, respectively ; the average SE of the estimated residential-level PM10 was 27.36 microg/m3. The values for PM2.5 were 0.049, 0.0085, 1.389, and 4.13 microg/m3, respectively. Lognormal ordinary kriging yielded a smaller average SE and effectively eliminated out-of-range predicted values compared to regular ordinary kriging. Semiautomated daily kriging estimations and semivariogram cross-validations are feasible on a national scale. Lognormal ordinary kriging with a spherical model is valid for estimating daily ambient PM at geocoded residential addresses.Entities:
Mesh:
Substances:
Year: 2006 PMID: 16966091 PMCID: PMC1570082 DOI: 10.1289/ehp.9169
Source DB: PubMed Journal: Environ Health Perspect ISSN: 0091-6765 Impact factor: 9.031
Figure 1Spatial relationships between the residential locations, PM monitoring sites, and the geographic regions of the study.
Cross-validation summary statistics and semivariogram parameter estimates for PM10 from three different spatial models, year 2000.
| Model | Days | Mean | SD | Median | 2.5th percentile | 97.5th percentile |
|---|---|---|---|---|---|---|
| PE (μg/m3) | ||||||
| Exponential | 366 | 0.2347 | 1.3212 | 0.0294 | −0.6437 | 1.6690 |
| Gaussian | 366 | −0.1097 | 1.0509 | −0.1216 | −1.1230 | 1.0020 |
| Spherical | 366 | 0.0629 | 1.1999 | −0.0705 | −0.7914 | 1.4810 |
| RMSS | ||||||
| Exponential | 366 | 1.8374 | 1.5431 | 1.1410 | 0.8638 | 6.0240 |
| Gaussian | 366 | 1.1709 | 0.9891 | 1.0070 | 0.8140 | 2.2660 |
| Spherical | 366 | 1.2549 | 0.7988 | 1.0270 | 0.8094 | 4.1550 |
| SPE | ||||||
| Exponential | 366 | 0.0118 | 0.0330 | 0.0036 | −0.0274 | 0.1058 |
| Gaussian | 366 | −0.0094 | 0.0333 | −0.0071 | −0.0418 | 0.0274 |
| Spherical | 366 | −0.0011 | 0.0212 | −0.0034 | −0.0318 | 0.0470 |
| Nugget (μg/m3) | ||||||
| Exponential | 366 | 2,837.28 | 27,839.3 | 93.5230 | 0.0000 | 5,332.40 |
| Gaussian | 366 | 4,096.10 | 38,738.9 | 181.975 | 26.6230 | 7,466.20 |
| Spherical | 366 | 3,515.02 | 33,349.0 | 142.955 | 0.0000 | 7,143.10 |
| Partial sill (μg/m3) | ||||||
| Exponential | 366 | 7,957.38 | 91,589.2 | 258.515 | 49.1340 | 23,007.0 |
| Gaussian | 366 | 6,483.31 | 73,915.9 | 176.240 | 39.4570 | 23,716.0 |
| Spherical | 366 | 6,374.25 | 71,024.0 | 201.215 | 36.6550 | 22,736.0 |
| Range (m) | ||||||
| Exponential | 366 | 2,696,226 | 2,832,621 | 1,392,250 | 282,500 | 9,064,200 |
| Gaussian | 366 | 2,163,126 | 2,277,023 | 1,207,050 | 262,460 | 8,958,300 |
| Spherical | 366 | 2,447,936 | 2,375,933 | 1,424,050 | 280,820 | 8,958,300 |
Daily operating monitoring sites range from 148 to 1,061 sites.
Cross-validation summary statistics and semivariogram parameter estimates for PM2.5 from three different spatial models, year 2000.
| Model | Days | Mean | SD | Median | 2.5th percentile | 97.5th percentile |
|---|---|---|---|---|---|---|
| PE (μg/m3) | ||||||
| Exponential | 366 | 0.1067 | 0.1162 | 0.0857 | −0.0756 | 0.3835 |
| Gaussian | 366 | −0.0323 | 0.0846 | −0.0349 | −0.2084 | 0.1187 |
| Spherical | 366 | 0.0491 | 0.0883 | 0.0413 | −0.1033 | 0.2571 |
| RMSS | ||||||
| Exponential | 366 | 2.0953 | 1.6086 | 1.4365 | 0.5974 | 6.1640 |
| Gaussian | 366 | 0.9562 | 0.4500 | 0.9114 | 0.5517 | 1.5960 |
| Spherical | 366 | 1.3887 | 1.3037 | 1.0014 | 0.5532 | 4.5810 |
| SPE | ||||||
| Exponential | 366 | 0.0253 | 0.0356 | 0.0127 | −0.0178 | 0.1097 |
| Gaussian | 366 | −0.0102 | 0.0155 | −0.0096 | −0.0379 | 0.0178 |
| Spherical | 366 | 0.0085 | 0.0242 | 0.0038 | −0.0219 | 0.0749 |
| Nugget (μg/m3) | ||||||
| Exponential | 366 | 9.4120 | 14.0622 | 4.2819 | 0.0000 | 46.2270 |
| Gaussian | 366 | 26.8536 | 19.8300 | 22.2560 | 3.3694 | 76.4140 |
| Spherical | 366 | 16.4381 | 16.5187 | 12.0995 | 0.0000 | 64.1640 |
| Partial sill (μg/m3) | ||||||
| Exponential | 366 | 94.0859 | 81.4191 | 70.0215 | 13.0410 | 304.610 |
| Gaussian | 366 | 80.2910 | 102.183 | 49.9360 | 8.8309 | 326.550 |
| Spherical | 366 | 84.3554 | 82.4740 | 56.7625 | 10.1850 | 299.980 |
| Range (m) | ||||||
| Exponential | 366 | 4,944,054 | 3,364,623 | 4,047,800 | 758,590 | 9,064,200 |
| Gaussian | 366 | 3,137,407 | 2,199,286 | 2,683,950 | 564,450 | 8,904,000 |
| Spherical | 366 | 3,840,664 | 2,669,710 | 3,370,250 | 667,310 | 8,944,000 |
Daily operating monitoring sites range from 178 to 1,019 sites.
Comparison of estimated PM10 (μg/m3) at 94,135 geocoded addresses of WHI CT participant residences and examination sites using default and manually modified semivariograms.
| Summary statistics of cross-validations
| Summary statistics of estimation
| |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PE
| RMSS
| SPE
| Mean PM10 | Mean SE
| PM10 difference (default – modified)
| |||||||
| Date | Default | Modified | Default | Modified | Default | Modified | Default | Modified | Default | Modified | Mean | SD |
| 02/16/2000 | 0.0122 | −0.0099 | 5.034 | 1.037 | 0.0470 | 0.0021 | 31.19 | 28.76 | 9.73 | 14.02 | 2.43 | 3.61 |
| 03/05/2000 | 0.1660 | 0.0474 | 5.134 | 1.360 | 0.0469 | 0.0058 | 20.85 | 20.10 | 10.99 | 13.80 | 0.75 | 4.24 |
| 07/15/2000 | 0.5278 | 0.0193 | 5.564 | 1.180 | 0.0674 | −0.0024 | 24.01 | 23.83 | 7.57 | 10.13 | 0.18 | 3.11 |
| 08/07/2000 | 0.5524 | −0.1056 | 6.183 | 1.134 | 0.1417 | −0.0053 | 34.84 | 33.79 | 14.09 | 17.27 | 1.06 | 2.70 |
| 08/19/2000 | 0.7609 | 0.3651 | 4.744 | 1.146 | 0.0963 | 0.0142 | 25.07 | 24.76 | 13.59 | 13.54 | 0.30 | 3.64 |
| 10/28/2000 | 0.4590 | 0.0363 | 4.243 | 1.276 | 0.0780 | 0.0018 | 25.17 | 24.23 | 5.57 | 7.40 | 0.93 | 2.16 |
Minima and maxima of measured and estimated PM10 (μg/m3) on the 22 days in 2000 when estimated values exceeded the range of measured values.
| Estimated from ordinary krigings
| Estimated from ordinary krigings
| |||||
|---|---|---|---|---|---|---|
| Date | Minimum measured | Regular | Lognormal | Maximum measured | Regular | Lognormal |
| 01/11 | 3.80 | −3.135 | 5.535 | 712.00 | 534.814 | 261.951 |
| 01/15 | 3.00 | 2.106 | 11.756 | 194.88 | 162.905 | 88.078 |
| 01/16 | 3.00 | 2.102 | 9.150 | 167.60 | 107.460 | 70.224 |
| 02/13 | 1.00 | −4.006 | 5.938 | 196.13 | 100.739 | 33.147 |
| 02/28 | 3.00 | −0.005 | 7.196 | 138.50 | 135.518 | 77.630 |
| 03/05 | 3.68 | −5.278 | 7.281 | 186.48 | 103.308 | 36.171 |
| 03/11 | 4.00 | 2.945 | 9.064 | 109.15 | 106.438 | 42.912 |
| 03/18 | 5.29 | 3.179 | 8.841 | 117.35 | 108.649 | 43.124 |
| 04/08 | 4.00 | −43.540 | 9.097 | 690.00 | 534.630 | 78.059 |
| 04/16 | 0.14 | −3.759 | 0.901 | 171.13 | 164.973 | 69.290 |
| 05/04 | 5.65 | −5.768 | 14.550 | 1063.00 | 808.397 | 61.646 |
| 05/09 | 2.00 | −15.362 | 10.889 | 3059.00 | 895.213 | 66.493 |
| 05/10 | 3.00 | −18.598 | 13.805 | 1513.00 | 1023.12 | 252.891 |
| 05/14 | 6.00 | 5.472 | 6.175 | 82.00 | 79.383 | 79.051 |
| 06/07 | 9.13 | −49.164 | 18.164 | 1642.00 | 1234.99 | 64.426 |
| 06/10 | 8.00 | 7.456 | 8.224 | 111.79 | 69.293 | 74.018 |
| 06/15 | 7.22 | 5.282 | 12.582 | 242.42 | 235.167 | 83.429 |
| 07/04 | 7.00 | 6.946 | 9.128 | 90.00 | 80.347 | 74.346 |
| 08/02 | 3.00 | −1.224 | 16.587 | 441.00 | 356.964 | 76.597 |
| 08/17 | 8.22 | 5.296 | 7.132 | 200.00 | 194.675 | 198.473 |
| 08/20 | 5.00 | 4.244 | 5.899 | 135.00 | 134.182 | 83.798 |
| 08/30 | 7.00 | 6.074 | 11.696 | 140.00 | 112.957 | 83.781 |
Means ± SDs of the cross-validation summary statistics from both ordinary and lognormal krigings, year 2000.
| All days ( | Out-of-range days ( | Within-range days ( | ||||
|---|---|---|---|---|---|---|
| SPE | RMSS | SPE | RMSS | SPE | RMSS | |
| Ordinary | −0.0011 ± 0.0212 | 1.2549 ± 0.7988 | 0.018489 ± 0.04202 | 3.329227 ± 1.93762 | −0.00147 ± 0.02018 | 1.18206 ± 0.67478 |
| Lognormal | −0.05012 ± 0.10191 | 1.390834 ± 1.56927 | −0.10918 ± 0.12434 | 2.374532 ± 2.18070 | −0.04635 ± 0.09933 | 1.327924 ± 1.50445 |
Comparisons of goodness of fit between national and regional scale krigings of the 12 days studied in 2000.
| SPE
| RMSS
| |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | Natl | SW | NW | MN | SE | NE | Natl | SW | NW | MN | SE | NE |
| 01/01 | 0.0106 | 0.0193 | −0.0238 | 0.0008 | −0.0168 | −0.0125 | 0.9843 | 0.9976 | 1.0042 | 1.0064 | 0.9642 | 0.8617 |
| 02/06 | 0.0034 | 0.0320 | −0.0013 | 0.0087 | 0.0241 | −0.0126 | 0.9996 | 1.0034 | 1.0203 | 0.9335 | 1.0370 | 0.9816 |
| 03/01 | 0.0159 | 0.0089 | 0.0456 | 0.0062 | −0.0079 | −0.0215 | 1.0237 | 1.0701 | 1.0505 | 1.0021 | 1.0067 | 1.0397 |
| 04/06 | −0.0015 | 0.0038 | 0.0286 | −0.0032 | 0.0014 | 0.0140 | 0.9992 | 0.9693 | 1.0927 | 0.8644 | 1.0000 | 0.9995 |
| 05/06 | −0.0052 | 0.0284 | −0.0420 | −0.0075 | −0.0095 | −0.0178 | 1.0732 | 1.0027 | 1.0162 | 0.9997 | 0.9938 | 0.9361 |
| 06/05 | −0.0079 | 0.0150 | 0.0105 | −0.0228 | −0.0086 | −0.0058 | 0.9966 | 0.9694 | 1.1046 | 0.9131 | 1.1005 | 1.0638 |
| 07/05 | 0.0031 | 0.0010 | 0.0083 | −0.0571 | −0.0233 | 0.0054 | 0.9938 | 0.9052 | 1.1020 | 0.9489 | 1.0043 | 1.0048 |
| 08/04 | 0.0108 | 0.0220 | −0.0025 | 0.0069 | −0.0208 | 0.0165 | 0.9922 | 0.9990 | 1.2180 | 1.0243 | 0.9932 | 1.0014 |
| 09/03 | 0.0053 | 0.0086 | −0.0013 | −0.0022 | 0.0054 | 0.0130 | 0.9731 | 1.0328 | 1.0393 | 1.0030 | 0.8441 | 1.0008 |
| 10/03 | 0.0055 | 0.0245 | 0.0164 | −0.0314 | 0.0287 | 0.0137 | 0.9692 | 1.0014 | 1.0052 | 0.9925 | 0.9948 | 0.9619 |
| 11/02 | 0.0190 | 0.0565 | 0.0364 | −0.0155 | 0.0432 | 0.0080 | 0.9956 | 0.9984 | 0.9210 | 0.9964 | 0.9933 | 1.0103 |
| 12/02 | 0.0130 | 0.0193 | 0.0379 | −0.0016 | 0.0308 | 0.0010 | 0.9956 | 0.9976 | 1.0037 | 1.0082 | 1.0454 | 1.1159 |
| Mean | 0.0060 | 0.0199 | 0.0094 | −0.0099 | 0.0039 | 0.0001 | 0.9997 | 0.9956 | 1.0481 | 0.9744 | 0.9981 | 0.9981 |
| Median | 0.0054 | 0.0193 | 0.0094 | −0.0027 | −0.0033 | 0.0032 | 0.9956 | 0.9987 | 1.0298 | 0.9981 | 0.9974 | 1.0011 |
| SD | 0.0083 | 0.0150 | 0.0259 | 0.0192 | 0.0225 | 0.0136 | 0.0269 | 0.0389 | 0.0743 | 0.0485 | 0.0598 | 0.0634 |
Abbreviations: Natl, national-scale kriging; MN, kriging in middle north region; NE, kriging in northeast region; NW, kriging in northwest region; SE, kriging in southeast region; SW, kriging in southwest region.
| WHI Program Office, National Heart, Lung, and Blood Institute, Bethesda, MD | Barbara Alving, Jacques Rossouw, Shari Ludlam, Linda Pottern, Joan McGowan, Leslie Ford, Nancy Geller |
| Clinical Coordinating Centers | |
| Fred Hutchinson Cancer Research Center, Seattle, WA | Ross Prentice, Garnet Anderson, Andrea LaCroix, Charles L. Kooperberg, Ruth E. Patterson, Anne McTiernan, Shirley Beresford |
| Wake Forest University School of Medicine, Winston-Salem, NC | Sally Shumaker |
| Medical Research Labs, Highland Heights, KY | Evan Stein |
| University of California–San Francisco, San Francisco, CA | Steven Cummings |
| Clinical Centers | |
| Albert Einstein College of Medicine, Bronx, NY | Sylvia Wassertheil-Smoller |
| Baylor College of Medicine, Houston, TX | Jennifer Hays |
| Brigham and Women’s Hospital, Harvard Medical School, Boston, MA | JoAnn Manson |
| Brown University, Providence, RI | Annlouise R. Assaf |
| Emory University, Atlanta, GA | Lawrence Phillips |
| George Washington University Medical Center, Washington, DC | Judith Hsia |
| Harbor-UCLA Research and Education Institute, Torrance, CA | Rowan Chlebowski |
| Kaiser Permanente Center for Health Research, Portland, OR | Evelyn Whitlock |
| Kaiser Permanente Division of Research, Oakland, CA | Bette Caan |
| Medical College of Wisconsin, Milwaukee, WI | Jane Morley Kotchen |
| MedStar Research Institute/Howard University, Washington, DC | Barbara V. Howard |
| Northwestern University, Chicago/Evanston, IL | Linda Van Horn |
| Ohio State University, Columbus, OH | Rebecca Jackson |
| Rush Medical Center, Chicago, IL | Henry Black |
| Stanford Prevention Research Center, Stanford, CA | Marcia L. Stefanick |
| State University of New York–Stony Brook, Stony Brook, NY | Dorothy Lane |
| University of Alabama at Birmingham, Birmingham, AL | Cora E. Lewis |
| University of Arizona, Tucson/Phoenix, AZ | Tamsen Bassford |
| University at Buffalo, Buffalo, NY | Jean Wactawski-Wende |
| University of California–Davis, Sacramento, CA | John Robbins |
| University of California–Irvine, Irvine, CA | F. Allan Hubbell |
| University of California–Los Angeles, Los Angeles, CA | Howard Judd |
| University of California–San Diego, La Jolla/Chula Vista, CA | Robert D. Langer |
| University of Cincinnati, Cincinnati, OH | Margery Gass |
| University of Florida, Gainesville/Jacksonville, FL | Marian Limacher |
| University of Hawaii, Honolulu, HI | David Curb |
| University of Iowa, Iowa City/Davenport, IA | Robert Wallace |
| University of Massachusetts/Fallon Clinic, Worcester, MA | Judith Ockene |
| University of Medicine and Dentistry of New Jersey, Newark, NJ | Norman Lasser |
| University of Miami, Miami, FL | Mary Jo O’Sullivan |
| University of Minnesota, Minneapolis, MN | Karen Margolis |
| University of Nevada, Reno, NV | Robert Brunner |
| University of North Carolina–Chapel Hill, Chapel Hill, NC | Gerardo Heiss |
| University of Pittsburgh, Pittsburgh, PA | Lewis Kuller |
| University of Tennessee, Memphis, TN | Karen C. Johnson |
| University of Texas Health Science Center, San Antonio, TX | Robert Brzyski |
| University of Wisconsin, Madison, WI | Gloria E. Sarto |
| Wake Forest University School of Medicine, Winston-Salem, NC | Denise Bonds |
| Wayne State University School of Medicine/Hutzel Hospital, Detroit, MI | Susan Hendrix |