Literature DB >> 16951073

Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction.

Amy C Luce1, Anupma Sharma, Oliver S B Mollere, Thomas K Wolfgruber, Kiyotaka Nagaki, Jiming Jiang, Gernot G Presting, R Kelly Dawe.   

Abstract

Centromeres are difficult to map even in species where genetic resolution is excellent. Here we show that junctions between repeats provide reliable single-copy markers for recombinant inbred mapping within centromeres and pericentromeric heterochromatin. Repeat junction mapping was combined with anti-CENH3-mediated ChIP to provide a definitive map position for maize centromere 8.

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Year:  2006        PMID： 16951073      PMCID： PMC1602074          DOI： 10.1534/genetics.106.060467

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  20 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  Genomic and genetic definition of a functional human centromere.

Authors:  M G Schueler; A W Higgins; M K Rudd; K Gustashaw; H F Willard
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

3.  Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population.

Authors:  Michael Lee; Natalya Sharopova; William D Beavis; David Grant; Maria Katt; Deborah Blair; Arnel Hallauer
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

4.  Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres.

Authors:  Kiyotaka Nagaki; Junqi Song; Robert M Stupar; Alexander S Parokonny; Qiaoping Yuan; Shu Ouyang; Jia Liu; Joseph Hsiao; Kristine M Jones; R Kelly Dawe; C Robin Buell; Jiming Jiang
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

Review 5.  A molecular view of plant centromeres.

Authors:  Jiming Jiang; James A Birchler; Wayne A Parrott; R Kelly Dawe
Journal:  Trends Plant Sci       Date:  2003-12       Impact factor: 18.313

6.  The paleontology of intergene retrotransposons of maize.

Authors:  P SanMiguel; B S Gaut; A Tikhonov; Y Nakajima; J L Bennetzen
Journal:  Nat Genet       Date:  1998-09       Impact factor: 38.330

7.  RFLP mapping of the centromere of chromosome 4 in maize using isochromosomes for 4S.

Authors:  M C Schneerman; W S Lee; G Doyle; D F Weber
Journal:  Theor Appl Genet       Date:  1998-03       Impact factor: 5.699

8.  Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species.

Authors:  Hye-Ran Lee; Wenli Zhang; Tim Langdon; Weiwei Jin; Huihuang Yan; Zhukuan Cheng; Jiming Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

9.  Centromere-encoded RNAs are integral components of the maize kinetochore.

Authors:  Christopher N Topp; Cathy X Zhong; R Kelly Dawe
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-28       Impact factor: 11.205

10.  Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize.

Authors:  Akio Kato; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205
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  18 in total

Review 1.  Completing the human genome: the progress and challenge of satellite DNA assembly.

Authors:  Karen H Miga
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  Widespread gene conversion in centromere cores.

Authors:  Jinghua Shi; Sarah E Wolf; John M Burke; Gernot G Presting; Jeffrey Ross-Ibarra; R Kelly Dawe
Journal:  PLoS Biol       Date:  2010-03-09       Impact factor: 8.029

3.  RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

Authors:  Frank M You; Humphrey Wanjugi; Naxin Huo; Gerard R Lazo; Ming-Cheng Luo; Olin D Anderson; Jan Dvorak; Yong Q Gu
Journal:  Nucleic Acids Res       Date:  2010-05-23       Impact factor: 16.971

4.  Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays.

Authors:  L B Kanizay; T Pyhäjärvi; E G Lowry; M B Hufford; D G Peterson; J Ross-Ibarra; R K Dawe
Journal:  Heredity (Edinb)       Date:  2013-02-27       Impact factor: 3.821

5.  Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity.

Authors:  Anupma Sharma; Gernot G Presting
Journal:  Mol Genet Genomics       Date:  2007-11-14       Impact factor: 3.291

6.  Repetitive sequence-derived markers tag centromeres and telomeres and provide insights into chromosome evolution in Brassica napus.

Authors:  Nicolas Pouilly; Régine Delourme; Karine Alix; Eric Jenczewski
Journal:  Chromosome Res       Date:  2008-06-07       Impact factor: 5.239

7.  A transgenomic cytogenetic sorghum (Sorghum propinquum) bacterial artificial chromosome fluorescence in situ hybridization map of maize (Zea mays L.) pachytene chromosome 9, evidence for regions of genome hyperexpansion.

Authors:  F Ina E Amarillo; Hank W Bass
Journal:  Genetics       Date:  2007-10-18       Impact factor: 4.562

8.  Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean.

Authors:  Zhixi Tian; Meixia Zhao; Maoyun She; Jianchang Du; Steven B Cannon; Xin Liu; Xun Xu; Xinpeng Qi; Man-Wah Li; Hon-Ming Lam; Jianxin Ma
Journal:  Plant Cell       Date:  2012-11-21       Impact factor: 11.277

9.  Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons.

Authors:  Thomas K Wolfgruber; Anupma Sharma; Kevin L Schneider; Patrice S Albert; Dal-Hoe Koo; Jinghua Shi; Zhi Gao; Fangpu Han; Hyeran Lee; Ronghui Xu; Jamie Allison; James A Birchler; Jiming Jiang; R Kelly Dawe; Gernot G Presting
Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917

10.  JunctionViewer: customizable annotation software for repeat-rich genomic regions.

Authors:  Thomas K Wolfgruber; Gernot G Presting
Journal:  BMC Bioinformatics       Date:  2010-01-12       Impact factor: 3.169
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