Literature DB >> 16942780

The asymmetric ATPase cycle of the thermosome: elucidation of the binding, hydrolysis and product-release steps.

Maria Giulia Bigotti1, Stuart R W Bellamy, Anthony R Clarke.   

Abstract

Using a combination of intrinsic fluorescence to report ATP-induced rearrangements, quenched-flow to measure ATP hydrolysis "on-enzyme" and optical methods to probe the kinetics of product release, we have begun to dissect the process of energy transduction in the thermosome, a type II chaperonin from Thermoplasma acidophilum. Stoichiometric measurements of ATP binding reveal the tight association of eight nucleotide molecules per hexa-decamer, implying the filling of only one ring owing to strong negative cooperativity. After binding, we show that these eight ATP molecules are hydrolysed over the next 50 s, after which hydrolysis slows down markedly during the establishment of the steady state in the ATPase reaction, demonstrating that the kinetic system is off-rate limited. Looking in more detail, this rapid first-turnover can be dissected into two phases; the first occurring with a half-time of 0.8 s, the second with a half-time of 14 s, possibly reflecting the differential behaviour of the four alpha and four beta subunits in a single thermosome ring. To investigate the post-hydrolytic events, we used two heat-stable enzyme-linked optical assays to measure the rate of evolution of ADP and of phosphate from the thermosome active site. Neither product showed a rapid dissociation phase prior to the establishment of the steady state, showing that both are released slowly at a rate that limits the cycle. These data highlight the importance of the highly populated thermosome/ADP/Pi complex in the molecular mechanism.

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Year:  2006        PMID: 16942780     DOI: 10.1016/j.jmb.2006.07.064

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  12 in total

1.  Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins.

Authors:  Stefanie Reissmann; Charles Parnot; Christopher R Booth; Wah Chiu; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2007-04-29       Impact factor: 15.369

Review 2.  The Mechanism and Function of Group II Chaperonins.

Authors:  Tom Lopez; Kevin Dalton; Judith Frydman
Journal:  J Mol Biol       Date:  2015-04-30       Impact factor: 5.469

Review 3.  The ATP-powered gymnastics of TRiC/CCT: an asymmetric protein folding machine with a symmetric origin story.

Authors:  Daniel Gestaut; Antonio Limatola; Lukasz Joachimiak; Judith Frydman
Journal:  Curr Opin Struct Biol       Date:  2019-04-09       Impact factor: 6.809

4.  Mechanism of nucleotide sensing in group II chaperonins.

Authors:  Jose H Pereira; Corie Y Ralston; Nicholai R Douglas; Ramya Kumar; Tom Lopez; Ryan P McAndrew; Kelly M Knee; Jonathan A King; Judith Frydman; Paul D Adams
Journal:  EMBO J       Date:  2011-12-23       Impact factor: 11.598

5.  Dual action of ATP hydrolysis couples lid closure to substrate release into the group II chaperonin chamber.

Authors:  Nicholai R Douglas; Stefanie Reissmann; Junjie Zhang; Bo Chen; Joanita Jakana; Ramya Kumar; Wah Chiu; Judith Frydman
Journal:  Cell       Date:  2011-01-21       Impact factor: 41.582

6.  Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes.

Authors:  Krishanu Mukherjee; Everly Conway de Macario; Alberto J L Macario; Luciano Brocchieri
Journal:  BMC Evol Biol       Date:  2010-03-01       Impact factor: 3.260

7.  xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry.

Authors:  Thomas Walzthoeni; Lukasz A Joachimiak; George Rosenberger; Hannes L Röst; Lars Malmström; Alexander Leitner; Judith Frydman; Ruedi Aebersold
Journal:  Nat Methods       Date:  2015-10-26       Impact factor: 28.547

8.  Structure of the human TRiC/CCT Subunit 5 associated with hereditary sensory neuropathy.

Authors:  Jose H Pereira; Ryan P McAndrew; Oksana A Sergeeva; Corie Y Ralston; Jonathan A King; Paul D Adams
Journal:  Sci Rep       Date:  2017-06-16       Impact factor: 4.379

9.  Intraring allostery controls the function and assembly of a hetero-oligomeric class II chaperonin.

Authors:  Deborah K Shoemark; Richard B Sessions; Andrea Brancaccio; Maria Giulia Bigotti
Journal:  FASEB J       Date:  2018-01-05       Impact factor: 5.191

10.  ATP dependent rotational motion of group II chaperonin observed by X-ray single molecule tracking.

Authors:  Hiroshi Sekiguchi; Ayumi Nakagawa; Kazuki Moriya; Koki Makabe; Kouhei Ichiyanagi; Shunsuke Nozawa; Tokushi Sato; Shin-ichi Adachi; Kunihiro Kuwajima; Masafumi Yohda; Yuji C Sasaki
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

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