Literature DB >> 16936140

Global replication-independent histone H4 exchange in budding yeast.

Jeffrey Linger1, Jessica K Tyler.   

Abstract

The eukaryotic genome is packaged together with histone proteins into chromatin following DNA replication. Recent studies have shown that histones can also be assembled into chromatin independently of DNA replication and that this dynamic exchange of histones may be biased toward sites undergoing transcription. Here we show that epitope-tagged histone H4 can be incorporated into nucleosomes throughout the budding yeast (Saccharomyces cerevisiae) genome regardless of the phase of the cell cycle, the transcriptional status, or silencing of the region. Direct comparisons reveal that the amount of histone incorporation that occurs in G(1)-arrested cells is similar to that occurring in cells undergoing DNA replication. Additionally, we show that this histone incorporation is not dependent on the histone H3/H4 chaperones CAF-1, Asf1, and Hir1 individually. This study demonstrates that DNA replication and transcription are not necessary prerequisites for histone exchange in budding yeast, indicating that chromatin is more dynamic than previously thought.

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Year:  2006        PMID: 16936140      PMCID: PMC1595336          DOI: 10.1128/EC.00202-06

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  45 in total

Review 1.  In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.

Authors:  M H Kuo; C D Allis
Journal:  Methods       Date:  1999-11       Impact factor: 3.608

Review 2.  Chromatin assembly. Cooperation between histone chaperones and ATP-dependent nucleosome remodeling machines.

Authors:  Jessica K Tyler
Journal:  Eur J Biochem       Date:  2002-05

3.  The nuclear Hat1p/Hat2p complex: a molecular link between type B histone acetyltransferases and chromatin assembly.

Authors:  Xi Ai; Mark R Parthun
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

4.  The RCAF complex mediates chromatin assembly during DNA replication and repair.

Authors:  J K Tyler; C R Adams; S R Chen; R Kobayashi; R T Kamakaka; J T Kadonaga
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

5.  Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II.

Authors:  Marc A Schwabish; Kevin Struhl
Journal:  Mol Cell       Date:  2006-05-05       Impact factor: 17.970

6.  Identification and characterization of the genes encoding the core histones and histone variants of Neurospora crassa.

Authors:  Shan M Hays; Johanna Swanson; Eric U Selker
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

7.  Targeted mutagenesis of the Hira gene results in gastrulation defects and patterning abnormalities of mesoendodermal derivatives prior to early embryonic lethality.

Authors:  Catherine Roberts; Helen F Sutherland; Hannah Farmer; Wendy Kimber; Stephanie Halford; Alisoun Carey; Joshua M Brickman; Anthony Wynshaw-Boris; Peter J Scambler
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

8.  Normal stoichiometry of histone dimer sets is necessary for high fidelity of mitotic chromosome transmission.

Authors:  D Meeks-Wagner; L H Hartwell
Journal:  Cell       Date:  1986-01-17       Impact factor: 41.582

9.  A new method for the isolation of replicative chromatin: selective deposition of histone on both new and old DNA.

Authors:  V Jackson; R Chalkley
Journal:  Cell       Date:  1981-01       Impact factor: 41.582

Review 10.  The ins and outs of nucleosome assembly.

Authors:  J A Mello; G Almouzni
Journal:  Curr Opin Genet Dev       Date:  2001-04       Impact factor: 5.578

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  12 in total

1.  Recombination-induced tag exchange to track old and new proteins.

Authors:  Kitty F Verzijlbergen; Victoria Menendez-Benito; Tibor van Welsem; Sjoerd J van Deventer; Derek L Lindstrom; Huib Ovaa; Jacques Neefjes; Daniel E Gottschling; Fred van Leeuwen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

2.  Catalytic function of the PR-Set7 histone H4 lysine 20 monomethyltransferase is essential for mitotic entry and genomic stability.

Authors:  Sabrina I Houston; Kirk J McManus; Melissa M Adams; Jennifer K Sims; Phillip B Carpenter; Michael J Hendzel; Judd C Rice
Journal:  J Biol Chem       Date:  2008-05-14       Impact factor: 5.157

3.  Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation.

Authors:  Stephanie K Williams; David Truong; Jessica K Tyler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-24       Impact factor: 11.205

4.  A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding.

Authors:  Monique Floer; Xin Wang; Vidya Prabhu; Georgina Berrozpe; Santosh Narayan; Dan Spagna; David Alvarez; Jude Kendall; Alexander Krasnitz; Asya Stepansky; James Hicks; Gene O Bryant; Mark Ptashne
Journal:  Cell       Date:  2010-04-30       Impact factor: 41.582

5.  Hypoxic repression of endothelial nitric-oxide synthase transcription is coupled with eviction of promoter histones.

Authors:  Jason E Fish; Matthew S Yan; Charles C Matouk; Rosanne St Bernard; J J David Ho; J J David Ho; Anna Gavryushova; Deepak Srivastava; Philip A Marsden
Journal:  J Biol Chem       Date:  2009-10-30       Impact factor: 5.157

6.  Histone Chaperone Nap1 Is a Major Regulator of Histone H2A-H2B Dynamics at the Inducible GAL Locus.

Authors:  Xu Chen; Sheena D'Arcy; Catherine A Radebaugh; Daniel D Krzizike; Holli A Giebler; Liangquan Huang; Jennifer K Nyborg; Karolin Luger; Laurie A Stargell
Journal:  Mol Cell Biol       Date:  2016-03-31       Impact factor: 4.272

7.  Quantitative analysis of the transcription control mechanism.

Authors:  Changhui Mao; Christopher R Brown; Elena Falkovskaia; Shawfeng Dong; Eva Hrabeta-Robinson; Lauren Wenger; Hinrich Boeger
Journal:  Mol Syst Biol       Date:  2010-11-19       Impact factor: 11.429

8.  A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover.

Authors:  Kitty F Verzijlbergen; Tibor van Welsem; Daoud Sie; Tineke L Lenstra; Daniel J Turner; Frank C P Holstege; Ron M Kerkhoven; Fred van Leeuwen
Journal:  PLoS Genet       Date:  2011-10-06       Impact factor: 5.917

9.  Dissecting the roles of the histone chaperones reveals the evolutionary conserved mechanism of transcription-coupled deposition of H3.3.

Authors:  Yunkyoung Song; Ja-Hwan Seol; Jae-Hyun Yang; Hye-Jin Kim; Jeung-Whan Han; Hong-Duk Youn; Eun-Jung Cho
Journal:  Nucleic Acids Res       Date:  2013-04-05       Impact factor: 16.971

10.  Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions.

Authors:  Irit Gat-Viks; Martin Vingron
Journal:  PLoS Comput Biol       Date:  2009-02-06       Impact factor: 4.475

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