Literature DB >> 16929107

Development of an automated large-scale protein-crystallization and monitoring system for high-throughput protein-structure analyses.

Masahiko Hiraki1, Ryuichi Kato, Minoru Nagai, Tadashi Satoh, Satoshi Hirano, Kentaro Ihara, Norio Kudo, Masamichi Nagae, Masanori Kobayashi, Michio Inoue, Tamami Uejima, Shunichiro Oda, Leonard M G Chavas, Masato Akutsu, Yusuke Yamada, Masato Kawasaki, Naohiro Matsugaki, Noriyuki Igarashi, Mamoru Suzuki, Soichi Wakatsuki.   

Abstract

Protein crystallization remains one of the bottlenecks in crystallographic analysis of macromolecules. An automated large-scale protein-crystallization system named PXS has been developed consisting of the following subsystems, which proceed in parallel under unified control software: dispensing precipitants and protein solutions, sealing crystallization plates, carrying robot, incubators, observation system and image-storage server. A sitting-drop crystallization plate specialized for PXS has also been designed and developed. PXS can set up 7680 drops for vapour diffusion per hour, which includes time for replenishing supplies such as disposable tips and crystallization plates. Images of the crystallization drops are automatically recorded according to a preprogrammed schedule and can be viewed by users remotely using web-based browser software. A number of protein crystals were successfully produced and several protein structures could be determined directly from crystals grown by PXS. In other cases, X-ray quality crystals were obtained by further optimization by manual screening based on the conditions found by PXS.

Mesh:

Substances:

Year:  2006        PMID: 16929107     DOI: 10.1107/S0907444906023821

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  23 in total

1.  Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase.

Authors:  Kensuke Nakamura; Zhiqiu Man; Yong Xie; Ayako Hanai; Hisayoshi Makyio; Masato Kawasaki; Ryuichi Kato; Hye-Won Shin; Kazuhisa Nakayama; Soichi Wakatsuki
Journal:  J Biol Chem       Date:  2012-06-07       Impact factor: 5.157

2.  Development of high-performance X-ray transparent crystallization plates for in situ protein crystal screening and analysis.

Authors:  Ahmed S M Soliman; Matthew Warkentin; Benjamin Apker; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-06-11

3.  Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

Authors:  Ayaka Harada; Yukari Sato; Naofumi Kamimura; Nagarajan Venugopalan; Eiji Masai; Toshiya Senda
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-11-30       Impact factor: 1.056

4.  Structural basis for Arf6-MKLP1 complex formation on the Flemming body responsible for cytokinesis.

Authors:  Hisayoshi Makyio; Minako Ohgi; Tomomi Takei; Senye Takahashi; Hiroyuki Takatsu; Yohei Katoh; Ayako Hanai; Tomoko Ueda; Yasunori Kanaho; Yong Xie; Hye-Won Shin; Hironari Kamikubo; Mikio Kataoka; Masato Kawasaki; Ryuichi Kato; Soichi Wakatsuki; Kazuhisa Nakayama
Journal:  EMBO J       Date:  2012-04-20       Impact factor: 11.598

5.  A neuropathy-associated kinesin KIF1A mutation hyper-stabilizes the motor-neck interaction during the ATPase cycle.

Authors:  Manatsu Morikawa; Nivedita U Jerath; Tadayuki Ogawa; Momo Morikawa; Yosuke Tanaka; Michael E Shy; Stephan Zuchner; Nobutaka Hirokawa
Journal:  EMBO J       Date:  2022-02-08       Impact factor: 11.598

6.  Crystallization and preliminary crystallographic analysis of acetophenone reductase from Geotrichum candidum NBRC 4597.

Authors:  Yosuke Sugiyama; Miki Senda; Toshiya Senda; Tomoko Matsuda
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-02-19       Impact factor: 1.056

7.  Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2.

Authors:  Hironori Suzuki; Masato Kawasaki; Takeshi Kakiuchi; Hideki Shibata; Soichi Wakatsuki; Masatoshi Maki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31

8.  Streamlined, automated protocols for the production of milligram quantities of untagged recombinant human cyclophilin-A (hCypA) and untagged human proliferating cell nuclear antigen (hPCNA) using AKTAxpress.

Authors:  Cornelia Ludwig; Martin A Wear; Malcolm D Walkinshaw
Journal:  Protein Expr Purif       Date:  2009-12-06       Impact factor: 1.650

9.  Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition.

Authors:  Tatsutoshi Inuzuka; Hironori Suzuki; Masato Kawasaki; Hideki Shibata; Soichi Wakatsuki; Masatoshi Maki
Journal:  BMC Struct Biol       Date:  2010-08-06

10.  Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.

Authors:  Hitoshi Iino; Hisashi Naitow; Yuki Nakamura; Noriko Nakagawa; Yoshihiro Agari; Mayumi Kanagawa; Akio Ebihara; Akeo Shinkai; Mitsuaki Sugahara; Masashi Miyano; Nobuo Kamiya; Shigeyuki Yokoyama; Ken Hirotsu; Seiki Kuramitsu
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-05-30
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