Literature DB >> 16928026

Intermolecular coulomb couplings from ab initio electrostatic potentials: application to optical transitions of strongly coupled pigments in photosynthetic antennae and reaction centers.

M E Madjet1, A Abdurahman, T Renger.   

Abstract

An accurate and numerically efficient method for the calculation of intermolecular Coulomb couplings between charge densities of electronic states and between transition densities of electronic excitations is presented. The coupling of transition densities yields the Förster type excitation energy transfer coupling, and from the charge density coupling, a shift in molecular excitation energies results. Starting from an ab initio calculation of the charge and transition densities, atomic partial charges are determined such as to fit the resulting electrostatic potentials of the different states and the transition. The different intermolecular couplings are then obtained from the Coulomb couplings between the respective atomic partial charges. The excitation energy transfer couplings obtained in the present TrEsp (transition charge from electrostatic potential) method are compared with couplings obtained from the simple point-dipole and extended dipole approximations and with those from the ab initio transition density cube method of Krüger, Scholes, and Fleming. The present method is of the same accuracy as the latter but computationally more efficient. The method is applied to study strongly coupled pigments in the light-harvesting complexes of green sulfur bacteria (FMO), purple bacteria (LH2), and higher plants (LHC-II) and the "special pairs" of bacterial reaction centers and reaction centers of photosystems I and II. For the pigment dimers in the antennae, it is found that the mutual orientation of the pigments is optimized for maximum excitonic coupling. A driving force for this orientation is the Coulomb coupling between ground-state charge densities. In the case of excitonic couplings in the "special pairs", a breakdown of the point-dipole approximation is found for all three reaction centers, but the extended dipole approximation works surprisingly well, if the extent of the transition dipole is chosen larger than assumed previously. For the "special pairs", a large shift in local transition energies is found due to charge density coupling.

Entities:  

Year:  2006        PMID: 16928026     DOI: 10.1021/jp0615398

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  55 in total

1.  From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex.

Authors:  Carsten Olbrich; Thomas L C Jansen; Jörg Liebers; Mortaza Aghtar; Johan Strümpfer; Klaus Schulten; Jasper Knoester; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2011-06-14       Impact factor: 2.991

2.  Calculation of chromophore excited state energy shifts in response to molecular dynamics of pigment-protein complexes.

Authors:  Serguei Vassiliev; Abdullah Mahboob; Doug Bruce
Journal:  Photosynth Res       Date:  2011-10-01       Impact factor: 3.573

3.  Electronic coherence dephasing in excitonic molecular complexes: role of Markov and secular approximations.

Authors:  Jan Olšina; Tomáš Mančal
Journal:  J Mol Model       Date:  2010-07-14       Impact factor: 1.810

4.  Ultraviolet spectroscopy of protein backbone transitions in aqueous solution: combined QM and MM simulations.

Authors:  Jun Jiang; Darius Abramavicius; Benjamin M Bulheller; Jonathan D Hirst; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2010-06-24       Impact factor: 2.991

5.  An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches.

Authors:  Jing Huang; Ye Mei; Gerhard König; Andrew C Simmonett; Frank C Pickard; Qin Wu; Lee-Ping Wang; Alexander D MacKerell; Bernard R Brooks; Yihan Shao
Journal:  J Chem Theory Comput       Date:  2017-01-24       Impact factor: 6.006

6.  Calculation of pigment transition energies in the FMO protein: from simplicity to complexity and back.

Authors:  Julia Adolphs; Frank Müh; Mohamed El-Amine Madjet; Thomas Renger
Journal:  Photosynth Res       Date:  2007-10-05       Impact factor: 3.573

7.  Alpha-helices direct excitation energy flow in the Fenna Matthews Olson protein.

Authors:  Frank Müh; Mohamed El-Amine Madjet; Julia Adolphs; Ayjamal Abdurahman; Björn Rabenstein; Hiroshi Ishikita; Ernst-Walter Knapp; Thomas Renger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-11       Impact factor: 11.205

Review 8.  Structure-based modeling of energy transfer in photosynthesis.

Authors:  Thomas Renger; Mohamed El-Amine Madjet; Marcel Schmidt am Busch; Julian Adolphs; Frank Müh
Journal:  Photosynth Res       Date:  2013-08-07       Impact factor: 3.573

Review 9.  Theory of excitation energy transfer: from structure to function.

Authors:  Thomas Renger
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

10.  Energy migration as related to the mutual position and orientation of donor and acceptor molecules in LH1 and LH2 antenna complexes of purple bacteria.

Authors:  A Y Borisov; A V Rybina
Journal:  Photosynth Res       Date:  2008-09-03       Impact factor: 3.573

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