Literature DB >> 16924546

Molecular genetics of berry colour variation in table grape.

Diego Lijavetzky1, Leonor Ruiz-García, José A Cabezas, María T De Andrés, Gemma Bravo, Ana Ibáñez, Juan Carreño, Félix Cabello, Javier Ibáñez, José M Martínez-Zapater.   

Abstract

The genetics and biochemistry of anthocyanins and flavonol biosynthesis and their role in plant organ pigmentation is well established in model species. However, the genetic basis of colour variation is species specific and understanding this variation is very relevant in many fruit and flower crop species. Among grape cultivars, there is a wide genetic variation for berry colour ranging from yellow-green ("white" cultivars) to dark blue berries. Berry colour results from the synthesis and accumulation of anthocyanins in the berry skin, which in plants is commonly regulated by transcription factors belonging to the MYB and bHLH families. In this work, we aimed to identify the major genetic determinants of berry colour variation in a large collection of table grape cultivars and somatic variants. The genetic analyses of berry colour in a few grape segregating progenies had previously identified a single locus on linkage group 2 responsible for colour variation. Furthermore, somatic variation for berry skin colour in cultivar Italia had been associated with the presence of a Gret1 retrotransposon in the promoter region of VvmybA1, a Myb gene whose expression is associated to skin colouration. The results show that VvmybA1 is the gene underlying the mapped locus controlling berry colour in grape. Additionally, the molecular analyses indicate that genetic and somatic berry colour variation can be associated to molecular variation at VvmybA1 in more than 95% of the analyzed cultivars. Thus, VvmybA1 is a major determinant of berry colour variation in table grape and its instability is the major cause of somatic variation for this trait.

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Year:  2006        PMID: 16924546     DOI: 10.1007/s00438-006-0149-1

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  27 in total

Review 1.  Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology.

Authors:  B Winkel-Shirley
Journal:  Plant Physiol       Date:  2001-06       Impact factor: 8.340

2.  Myb-related genes of the Kyoho grape ( Vitis labruscana) regulate anthocyanin biosynthesis.

Authors:  S Kobayashi; M Ishimaru; K Hiraoka; C Honda
Journal:  Planta       Date:  2002-07-16       Impact factor: 4.116

3.  Retrotransposon-induced mutations in grape skin color.

Authors:  Shozo Kobayashi; Nami Goto-Yamamoto; Hirohiko Hirochika
Journal:  Science       Date:  2004-05-14       Impact factor: 47.728

4.  The A locus that controls anthocyanin accumulation in pepper encodes a MYB transcription factor homologous to Anthocyanin2 of Petunia.

Authors:  Yelena Borovsky; Michal Oren-Shamir; Rinat Ovadia; Walter De Jong; Ilan Paran
Journal:  Theor Appl Genet       Date:  2004-03-03       Impact factor: 5.699

5.  Development of a standard set of microsatellite reference alleles for identification of grape cultivars.

Authors:  P This; A Jung; P Boccacci; J Borrego; R Botta; L Costantini; M Crespan; G S Dangl; C Eisenheld; F Ferreira-Monteiro; S Grando; J Ibáñez; T Lacombe; V Laucou; R Magalhães; C P Meredith; N Milani; E Peterlunger; F Regner; L Zulini; E Maul
Journal:  Theor Appl Genet       Date:  2004-09-30       Impact factor: 5.699

6.  Fruit characters as a basis of fruit choice and seed dispersal in a tropical forest vertebrate community.

Authors:  A Gautier-Hion; J -M Duplantier; R Quris; F Feer; C Sourd; J -P Decoux; G Dubost; L Emmons; C Erard; P Hecketsweiler; A Moungazi; C Roussilhon; J -M Thiollay
Journal:  Oecologia       Date:  1985-02       Impact factor: 3.225

7.  Comparison of UDP-glucose:flavonoid 3-O-glucosyltransferase (UFGT) gene sequences between white grapes (Vitis vinifera) and their sports with red skin.

Authors:  S Kobayashi; M Ishimaru; C K. Ding; H Yakushiji; N Goto
Journal:  Plant Sci       Date:  2001-02-05       Impact factor: 4.729

8.  Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins.

Authors:  M B Sainz; E Grotewold; V L Chandler
Journal:  Plant Cell       Date:  1997-04       Impact factor: 11.277

9.  Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine.

Authors:  B M Fischer; I Salakhutdinov; M Akkurt; R Eibach; K J Edwards; R Töpfer; E M Zyprian
Journal:  Theor Appl Genet       Date:  2003-10-22       Impact factor: 5.699

10.  Colour variation in red grapevines (Vitis vinifera L.): genomic organisation, expression of flavonoid 3'-hydroxylase, flavonoid 3',5'-hydroxylase genes and related metabolite profiling of red cyanidin-/blue delphinidin-based anthocyanins in berry skin.

Authors:  Simone D Castellarin; Gabriele Di Gaspero; Raffaella Marconi; Alberto Nonis; Enrico Peterlunger; Sophie Paillard; Anne-Francoise Adam-Blondon; Raffaele Testolin
Journal:  BMC Genomics       Date:  2006-01-24       Impact factor: 3.969

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  38 in total

1.  A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes.

Authors:  Marzia Salmaso; Giulia Malacarne; Michela Troggio; Giorgia Faes; Marco Stefanini; M Stella Grando; Riccardo Velasco
Journal:  Theor Appl Genet       Date:  2008-05       Impact factor: 5.699

2.  Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) berry: a quantitative trait locus to quantitative trait nucleotide integrated study.

Authors:  Alexandre Fournier-Level; Loïc Le Cunff; Camila Gomez; Agnès Doligez; Agnès Ageorges; Catherine Roux; Yves Bertrand; Jean-Marc Souquet; Véronique Cheynier; Patrice This
Journal:  Genetics       Date:  2009-08-31       Impact factor: 4.562

3.  Tinkering with the C-function: a molecular frame for the selection of double flowers in cultivated roses.

Authors:  Annick Dubois; Olivier Raymond; Marion Maene; Sylvie Baudino; Nicolas B Langlade; Véronique Boltz; Philippe Vergne; Mohammed Bendahmane
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

4.  Catastrophic Unbalanced Genome Rearrangements Cause Somatic Loss of Berry Color in Grapevine.

Authors:  Pablo Carbonell-Bejerano; Carolina Royo; Rafael Torres-Pérez; Jérôme Grimplet; Lucie Fernandez; José Manuel Franco-Zorrilla; Diego Lijavetzky; Elisa Baroja; Juana Martínez; Enrique García-Escudero; Javier Ibáñez; José Miguel Martínez-Zapater
Journal:  Plant Physiol       Date:  2017-08-15       Impact factor: 8.340

5.  MybA1 gene diversity across the Vitis genus.

Authors:  Jean-Pierre Péros; Amandine Launay; Gilles Berger; Thierry Lacombe; Patrice This
Journal:  Genetica       Date:  2015-04-22       Impact factor: 1.082

6.  Haplotype composition at the color locus is a major genetic determinant of skin color variation in Vitis × labruscana grapes.

Authors:  Akifumi Azuma; Yukinobu Udo; Akihiko Sato; Nobuhito Mitani; Atsushi Kono; Yusuke Ban; Hiroshi Yakushiji; Yoshiko Koshita; Shozo Kobayashi
Journal:  Theor Appl Genet       Date:  2011-02-11       Impact factor: 5.699

7.  Zibibbo nero characterization, a red-wine grape revertant of muscat of Alexandria.

Authors:  Gabriella De Lorenzis; Margherita Squadrito; Lucio Brancadoro; Attilio Scienza
Journal:  Mol Biotechnol       Date:  2015-03       Impact factor: 2.695

8.  Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine development.

Authors:  Maria Concetta Palumbo; Sara Zenoni; Marianna Fasoli; Mélanie Massonnet; Lorenzo Farina; Filippo Castiglione; Mario Pezzotti; Paola Paci
Journal:  Plant Cell       Date:  2014-12-09       Impact factor: 11.277

9.  Genomic amplification of the Gret1 retroelement in white-fruited accessions of wild vitis and interspecific hybrids.

Authors:  Molly M Cadle-Davidson; Christopher L Owens
Journal:  Theor Appl Genet       Date:  2008-05       Impact factor: 5.699

10.  Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera.

Authors:  José Tomás Matus; Rodrigo Loyola; Andrea Vega; Alvaro Peña-Neira; Edmundo Bordeu; Patricio Arce-Johnson; José Antonio Alcalde
Journal:  J Exp Bot       Date:  2009-01-06       Impact factor: 6.992

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