Literature DB >> 16922491

Revealing the nature of the native state ensemble through cold denaturation.

Steven T Whitten1, Andrew J Kurtz, Maxim S Pometun, A Joshua Wand, Vincent J Hilser.   

Abstract

Recent advances in NMR methodology have enabled the structural analysis of proteins at temperatures far below the freezing point of water, thus opening a window to the cold denaturation process. Although the phenomenon of cold denaturation has been known since the mid-1970s, the freezing point of water has prevented detailed and structurally resolved studies without application of additional significant perturbations of the protein ensemble. As a result, the cold-denatured state and the process of cold denaturation have gone largely unstudied. Here, the structural and thermodynamic basis of cold denaturation is explored with emphasis placed on the insights that are uniquely ascertained from low-temperature studies. It is shown that the noncooperative cold-induced unfolding of protein results in the population of partially folded states that cannot be accessed by other techniques. The structurally resolved view of the cold denaturation process therefore can provide direct access to the cooperative substructures within the protein molecule and provide an unprecedented structurally resolved picture of the states that comprise the native state ensemble.

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Year:  2006        PMID: 16922491     DOI: 10.1021/bi060855+

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

1.  Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding.

Authors:  Suwei Wang; Jenny Gu; Scott A Larson; Steven T Whitten; Vincent J Hilser
Journal:  J Mol Biol       Date:  2008-06-24       Impact factor: 5.469

2.  Quantitative assessment of protein structural models by comparison of H/D exchange MS data with exchange behavior accurately predicted by DXCOREX.

Authors:  Tong Liu; Dennis Pantazatos; Sheng Li; Yoshitomo Hamuro; Vincent J Hilser; Virgil L Woods
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-20       Impact factor: 3.109

3.  An energetic representation of protein architecture that is independent of primary and secondary structure.

Authors:  Jason Vertrees; James O Wrabl; Vincent J Hilser
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

4.  Molten globule and native state ensemble of Helicobacter pylori flavodoxin: can crowding, osmolytes or cofactors stabilize the native conformation relative to the molten globule?

Authors:  N Cremades; J Sancho
Journal:  Biophys J       Date:  2008-04-25       Impact factor: 4.033

5.  The Unfolded State of the C-Terminal Domain of L9 Expands at Low but Not at Elevated Temperatures.

Authors:  Natalie E Stenzoski; Bowu Luan; Alex S Holehouse; Daniel P Raleigh
Journal:  Biophys J       Date:  2018-07-23       Impact factor: 4.033

6.  Expanded monomeric intermediate upon cold and heat unfolding of phosphofructokinase-2 from Escherichia coli.

Authors:  Mauricio Baez; Christian A M Wilson; César A Ramírez-Sarmiento; Victoria Guixé; Jorge Babul
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

Review 7.  The role of protein conformational fluctuations in allostery, function, and evolution.

Authors:  James O Wrabl; Jenny Gu; Tong Liu; Travis P Schrank; Steven T Whitten; Vincent J Hilser
Journal:  Biophys Chem       Date:  2011-05-31       Impact factor: 2.352

8.  Investigating homology between proteins using energetic profiles.

Authors:  James O Wrabl; Vincent J Hilser
Journal:  PLoS Comput Biol       Date:  2010-03-26       Impact factor: 4.475

9.  Energetic profiling of protein folds.

Authors:  Jason Vertrees; James O Wrabl; Vincent J Hilser
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

10.  Freezing-induced fluid-matrix interaction in poroelastic material.

Authors:  Bumsoo Han; Jeffrey D Miller; Jun K Jung
Journal:  J Biomech Eng       Date:  2009-02       Impact factor: 2.097

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