Literature DB >> 1691851

A method for construction of long randomized open reading frames and polypeptides.

W Mandecki1.   

Abstract

A method is presented for construction of randomized open reading frame sequences (ORFs) and gene libraries containing them. The building blocks for the ORFs were 75 bp long DNA fragments generated by cloning sequences from a single synthetic oligonucleotide preparation by bridge mutagenesis. The fragments had the property that, regardless of their orientation in the ligated product, the ORF of the construct was maintained. The heterogeneity of the ORFs resulted from the random ligation of 2000 different DNA fragments. The randomized ORFs were cloned downstream from the lac promoter in a multicopy plasmid in Escherichia coli. To test the method, a library of 10(6) clones was constructed.

Entities:  

Mesh:

Substances:

Year:  1990        PMID: 1691851     DOI: 10.1093/protein/3.3.221

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  14 in total

1.  A hierarchical approach to protein molecular evolution.

Authors:  L D Bogarad; M W Deem
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

2.  Random multi-recombinant PCR for the construction of combinatorial protein libraries.

Authors:  T Tsuji; M Onimaru; H Yanagawa
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

3.  Solution structure of a de novo protein from a designed combinatorial library.

Authors:  Yinan Wei; Seho Kim; David Fela; Jean Baum; Michael H Hecht
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-30       Impact factor: 11.205

Review 4.  De novo proteins from designed combinatorial libraries.

Authors:  Michael H Hecht; Aditi Das; Abigail Go; Luke H Bradley; Yinan Wei
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

5.  Comparative characterization of random-sequence proteins consisting of 5, 12, and 20 kinds of amino acids.

Authors:  Junko Tanaka; Nobuhide Doi; Hideaki Takashima; Hiroshi Yanagawa
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

6.  What can information-asymmetric games tell us about the context of Crick's 'frozen accident'?

Authors:  Justin Jee; Andrew Sundstrom; Steven E Massey; Bud Mishra
Journal:  J R Soc Interface       Date:  2013-08-28       Impact factor: 4.118

7.  Cofactor binding and enzymatic activity in an unevolved superfamily of de novo designed 4-helix bundle proteins.

Authors:  Shona C Patel; Luke H Bradley; Sayuri P Jinadasa; Michael H Hecht
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

8.  Structure and dynamics of de novo proteins from a designed superfamily of 4-helix bundles.

Authors:  Abigail Go; Seho Kim; Jean Baum; Michael H Hecht
Journal:  Protein Sci       Date:  2008-05       Impact factor: 6.725

9.  Proteins from an unevolved library of de novo designed sequences bind a range of small molecules.

Authors:  Izhack Cherny; Maria Korolev; Angela N Koehler; Michael H Hecht
Journal:  ACS Synth Biol       Date:  2012-04-02       Impact factor: 5.110

10.  Libraries of random-sequence polypeptides produced with high yield as carboxy-terminal fusions with ubiquitin.

Authors:  T H LaBean; S A Kauffman; T R Butt
Journal:  Mol Divers       Date:  1995-09       Impact factor: 2.943

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.