Literature DB >> 16902041

Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin.

Yuli Song1, Eija Könönen2, Merja Rautio2, Chengxu Liu1, Anne Bryk2, Erkki Eerola3, Sydney M Finegold4,5,6.   

Abstract

Two groups of previously unknown Gram-negative, strictly anaerobic, pigment-producing, rod-shaped bacteria, which phenotypically and phylogenetically displayed a close association with the recently described species Alistipes finegoldii, were characterized using phenotypic and molecular taxonomic methods. A 16S rRNA gene sequence divergence of approximately 3 % between the two unknown bacteria and A. finegoldii, as well as distinguishable biochemical characteristics, demonstrates that these organisms are genotypically and phenotypically distinct and that each group represents a previously unknown subline within the genus Alistipes. Chromosomal DNA-DNA reassociation studies further confirmed the separateness of the unidentified bacteria and A. finegoldii. On the basis of the phenotypic and phylogenetic findings, two novel species, Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., are proposed. The type strains of A. onderdonkii and A. shahii are WAL 8169(T) (=CCUG 48946(T)=ATCC BAA-1178(T)) and WAL 8301(T) (=CCUG 48947(T)=ATCC BAA-1179(T)), respectively; their DNA G+C contents are 58 and 56 mol%, respectively.

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Year:  2006        PMID: 16902041     DOI: 10.1099/ijs.0.64318-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  40 in total

1.  Mucinivorans hirudinis gen. nov., sp. nov., an anaerobic, mucin-degrading bacterium isolated from the digestive tract of the medicinal leech Hirudo verbana.

Authors:  Michael C Nelson; Lindsey Bomar; Michele Maltz; Joerg Graf
Journal:  Int J Syst Evol Microbiol       Date:  2015-01-06       Impact factor: 2.747

2.  Comparative evaluation of establishing a human gut microbial community within rodent models.

Authors:  Melissa Wos-Oxley; André Bleich; Andrew P A Oxley; Silke Kahl; Lydia M Janus; Anna Smoczek; Hannes Nahrstedt; Marina C Pils; Stefan Taudien; Matthias Platzer; Hans-Jürgen Hedrich; Eva Medina; Dietmar H Pieper
Journal:  Gut Microbes       Date:  2012-05-01

3.  Characterization of Slackia exigua isolated from human wound infections, including abscesses of intestinal origin.

Authors:  Keun-Sung Kim; Marie-Claire Rowlinson; Robert Bennion; Chengxu Liu; David Talan; Paula Summanen; Sydney M Finegold
Journal:  J Clin Microbiol       Date:  2010-01-27       Impact factor: 5.948

4.  Dysbiosis of the gut microbiome is a risk factor for osteoarthritis in older female adults: a case control study.

Authors:  Juanjuan Chen; Anqi Wang; Qi Wang
Journal:  BMC Bioinformatics       Date:  2021-06-03       Impact factor: 3.169

5.  A Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium.

Authors:  Carlos Sabater; Lorena Ruiz; Abelardo Margolles
Journal:  Microorganisms       Date:  2021-05-11

6.  Gut Microbiome Composition Associated With Major Depressive Disorder and Sleep Quality.

Authors:  Qi Zhang; Yajun Yun; Huimei An; Wenxuan Zhao; Ting Ma; Zhiren Wang; Fude Yang
Journal:  Front Psychiatry       Date:  2021-05-21       Impact factor: 4.157

7.  Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov.

Authors:  Jean-Christophe Lagier; Fabrice Armougom; Ajay Kumar Mishra; Thi-Tien Nguyen; Didier Raoult; Pierre-Edouard Fournier
Journal:  Stand Genomic Sci       Date:  2012-07-20

8.  Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

Authors:  Konstantinos Mavromatis; Erko Stackebrandt; Christine Munk; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Marcel Huntemann; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Manfred Rohde; Sabine Gronow; Markus Göker; John C Detter; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2013-04-15

9.  Genome sequence and description of Alistipes senegalensis sp. nov.

Authors:  Ajay Kumar Mishra; Gregory Gimenez; Jean-Christophe Lagier; Catherine Robert; Didier Raoult; Pierre-Edouard Fournier
Journal:  Stand Genomic Sci       Date:  2012-07-20

10.  Gut Microbiome and Serum Metabolome Alterations Associated with Isolated Dystonia.

Authors:  Lingyan Ma; Jing Keng; Min Cheng; Hua Pan; Bo Feng; Yongfeng Hu; Tao Feng; Fan Yang
Journal:  mSphere       Date:  2021-08-04       Impact factor: 4.389

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