Literature DB >> 16901217

Concept of sample in OMICS technology.

Norman Morrison1, Guy Cochrane, Nadeem Faruque, Tatiana Tatusova, Yoshio Tateno, David Hancock, Dawn Field.   

Abstract

Fundamental biological processes can now be studied by applying the full range of OMICS technologies (genomics, transcriptomics, proteomics, metabolomics, and beyond) to the same biological sample. Clearly, it would be desirable if the concept of sample were shared among these technologies, especially as up until the time a biological sample is prepared for use in a specific OMICS assay, its description is inherently technology independent. Sharing a common informatic representation would encourage data sharing (rather than data replication), thereby reducing redundant data capture and the potential for error. This would result in a significant degree of harmonization across different OMICS data standardization activities, a task that is critical if we are to integrate data from these different data sources. Here, we review the current concept of sample in OMICS technologies as it is being dealt with by different OMICS standardization initiatives and discuss the special role that the newly formed Genomic Standards Consortium (GSC) might have to play in this domain.

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Year:  2006        PMID: 16901217     DOI: 10.1089/omi.2006.10.127

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  14 in total

Review 1.  Development of FuGO: an ontology for functional genomics investigations.

Authors:  Patricia L Whetzel; Ryan R Brinkman; Helen C Causton; Liju Fan; Dawn Field; Jennifer Fostel; Gilberto Fragoso; Tanya Gray; Mervi Heiskanen; Tina Hernandez-Boussard; Norman Morrison; Helen Parkinson; Philippe Rocca-Serra; Susanna-Assunta Sansone; Daniel Schober; Barry Smith; Robert Stevens; Christian J Stoeckert; Chris Taylor; Joe White; Andrew Wood
Journal:  OMICS       Date:  2006

2.  Foodomics: a new comprehensive approach to food and nutrition.

Authors:  Francesco Capozzi; Alessandra Bordoni
Journal:  Genes Nutr       Date:  2012-08-30       Impact factor: 5.523

Review 3.  Cryopreservation of Endangered Ornamental Plants and Fruit Crops from Tropical and Subtropical Regions.

Authors:  Behzad Kaviani; Dariusz Kulus
Journal:  Biology (Basel)       Date:  2022-05-31

Review 4.  Defining human diabetic nephropathy on the molecular level: integration of transcriptomic profiles with biological knowledge.

Authors:  Sebastian Martini; Felix Eichinger; Viji Nair; Matthias Kretzler
Journal:  Rev Endocr Metab Disord       Date:  2008-12       Impact factor: 6.514

5.  Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Authors:  Chris F Taylor; Dawn Field; Susanna-Assunta Sansone; Jan Aerts; Rolf Apweiler; Michael Ashburner; Catherine A Ball; Pierre-Alain Binz; Molly Bogue; Tim Booth; Alvis Brazma; Ryan R Brinkman; Adam Michael Clark; Eric W Deutsch; Oliver Fiehn; Jennifer Fostel; Peter Ghazal; Frank Gibson; Tanya Gray; Graeme Grimes; John M Hancock; Nigel W Hardy; Henning Hermjakob; Randall K Julian; Matthew Kane; Carsten Kettner; Christopher Kinsinger; Eugene Kolker; Martin Kuiper; Nicolas Le Novère; Jim Leebens-Mack; Suzanna E Lewis; Phillip Lord; Ann-Marie Mallon; Nishanth Marthandan; Hiroshi Masuya; Ruth McNally; Alexander Mehrle; Norman Morrison; Sandra Orchard; John Quackenbush; James M Reecy; Donald G Robertson; Philippe Rocca-Serra; Henry Rodriguez; Heiko Rosenfelder; Javier Santoyo-Lopez; Richard H Scheuermann; Daniel Schober; Barry Smith; Jason Snape; Christian J Stoeckert; Keith Tipton; Peter Sterk; Andreas Untergasser; Jo Vandesompele; Stefan Wiemann
Journal:  Nat Biotechnol       Date:  2008-08       Impact factor: 54.908

Review 6.  Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver.

Authors:  Scott L Friedman
Journal:  Physiol Rev       Date:  2008-01       Impact factor: 37.312

7.  Toxin induction and protein extraction from Fusarium spp. cultures for proteomic studies.

Authors:  Matias Pasquali; Frédéric Giraud; Jean Paul Lasserre; Sebastien Planchon; Lucien Hoffmann; Torsten Bohn; Jenny Renaut
Journal:  J Vis Exp       Date:  2010-02-16       Impact factor: 1.355

8.  The minimum information about a genome sequence (MIGS) specification.

Authors:  Dawn Field; George Garrity; Tanya Gray; Norman Morrison; Jeremy Selengut; Peter Sterk; Tatiana Tatusova; Nicholas Thomson; Michael J Allen; Samuel V Angiuoli; Michael Ashburner; Nelson Axelrod; Sandra Baldauf; Stuart Ballard; Jeffrey Boore; Guy Cochrane; James Cole; Peter Dawyndt; Paul De Vos; Claude DePamphilis; Robert Edwards; Nadeem Faruque; Robert Feldman; Jack Gilbert; Paul Gilna; Frank Oliver Glöckner; Philip Goldstein; Robert Guralnick; Dan Haft; David Hancock; Henning Hermjakob; Christiane Hertz-Fowler; Phil Hugenholtz; Ian Joint; Leonid Kagan; Matthew Kane; Jessie Kennedy; George Kowalchuk; Renzo Kottmann; Eugene Kolker; Saul Kravitz; Nikos Kyrpides; Jim Leebens-Mack; Suzanna E Lewis; Kelvin Li; Allyson L Lister; Phillip Lord; Natalia Maltsev; Victor Markowitz; Jennifer Martiny; Barbara Methe; Ilene Mizrachi; Richard Moxon; Karen Nelson; Julian Parkhill; Lita Proctor; Owen White; Susanna-Assunta Sansone; Andrew Spiers; Robert Stevens; Paul Swift; Chris Taylor; Yoshio Tateno; Adrian Tett; Sarah Turner; David Ussery; Bob Vaughan; Naomi Ward; Trish Whetzel; Ingio San Gil; Gareth Wilson; Anil Wipat
Journal:  Nat Biotechnol       Date:  2008-05       Impact factor: 54.908

9.  Fungome: Annotating proteins implicated in fungal pathogenesis.

Authors:  Ranganath Gudimella; Sivaramaiah Nallapeta; Pritish Varadwaj; Prashanth Suravajhala
Journal:  Bioinformation       Date:  2010-11-01

Review 10.  Omics strategies for revealing Yersinia pestis virulence.

Authors:  Ruifu Yang; Zongmin Du; Yanping Han; Lei Zhou; Yajun Song; Dongsheng Zhou; Yujun Cui
Journal:  Front Cell Infect Microbiol       Date:  2012-12-13       Impact factor: 5.293

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