Literature DB >> 16888624

TOR regulates late steps of ribosome maturation in the nucleoplasm via Nog1 in response to nutrients.

Yoshimi Honma1, Aiko Kitamura, Ryo Shioda, Hironori Maruyama, Kanako Ozaki, Yoko Oda, Thierry Mini, Paul Jenö, Yasushi Maki, Kazuyoshi Yonezawa, Ed Hurt, Masaru Ueno, Masahiro Uritani, Michael N Hall, Takashi Ushimaru.   

Abstract

The protein kinase TOR (target of rapamycin) controls several steps of ribosome biogenesis, including gene expression of rRNA and ribosomal proteins, and processing of the 35S rRNA precursor, in the budding yeast Saccharomyces cerevisiae. Here we show that TOR also regulates late stages of ribosome maturation in the nucleoplasm via the nuclear GTP-binding protein Nog1. Nog1 formed a complex that included 60S ribosomal proteins and pre-ribosomal proteins Nop7 and Rlp24. The Nog1 complex shuttled between the nucleolus and the nucleoplasm for ribosome biogenesis, but it was tethered to the nucleolus by both nutrient depletion and TOR inactivation, causing cessation of the late stages of ribosome biogenesis. Furthermore, after this, Nog1 and Nop7 proteins were lost, leading to complete cessation of ribosome maturation. Thus, the Nog1 complex is a critical regulator of ribosome biogenesis mediated by TOR. This is the first description of a physiological regulation of nucleolus-to-nucleoplasm translocation of pre-ribosome complexes.

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Year:  2006        PMID: 16888624      PMCID: PMC1553199          DOI: 10.1038/sj.emboj.7601262

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  60 in total

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2.  Composition and functional characterization of yeast 66S ribosome assembly intermediates.

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Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

3.  The replication fork block protein Fob1 functions as a negative regulator of the FEAR network.

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4.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

5.  Heat shock selectively inhibits ribosomal RNA gene transcription and down-regulates E1BF/Ku in mouse lymphosarcoma cells.

Authors:  K Ghoshal; S T Jacob
Journal:  Biochem J       Date:  1996-08-01       Impact factor: 3.857

6.  The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine.

Authors:  José L Crespo; Ted Powers; Brian Fowler; Michael N Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-07       Impact factor: 11.205

7.  mTOR-dependent activation of the transcription factor TIF-IA links rRNA synthesis to nutrient availability.

Authors:  Christine Mayer; Jian Zhao; Xuejun Yuan; Ingrid Grummt
Journal:  Genes Dev       Date:  2004-02-15       Impact factor: 11.361

8.  The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively.

Authors:  George Kallstrom; John Hedges; Arlen Johnson
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

9.  Target of rapamycin in yeast, TOR2, is an essential phosphatidylinositol kinase homolog required for G1 progression.

Authors:  J Kunz; R Henriquez; U Schneider; M Deuter-Reinhard; N R Movva; M N Hall
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10.  Has1p, a member of the DEAD-box family, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae.

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  30 in total

1.  Reduction in ribosomal protein synthesis is sufficient to explain major effects on ribosome production after short-term TOR inactivation in Saccharomyces cerevisiae.

Authors:  Alarich Reiter; Robert Steinbauer; Anja Philippi; Jochen Gerber; Herbert Tschochner; Philipp Milkereit; Joachim Griesenbeck
Journal:  Mol Cell Biol       Date:  2010-12-13       Impact factor: 4.272

2.  TOR regulates the subcellular distribution of DIM2, a KH domain protein required for cotranscriptional ribosome assembly and pre-40S ribosome export.

Authors:  Emmanuel Vanrobays; Alexis Leplus; Yvonne N Osheim; Ann L Beyer; Ludivine Wacheul; Denis L J Lafontaine
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

Review 3.  Powering through ribosome assembly.

Authors:  Bethany S Strunk; Katrin Karbstein
Journal:  RNA       Date:  2009-10-22       Impact factor: 4.942

4.  TOR-dependent reduction in the expression level of Rrn3p lowers the activity of the yeast RNA Pol I machinery, but does not account for the strong inhibition of rRNA production.

Authors:  Anja Philippi; Robert Steinbauer; Alarich Reiter; Stephan Fath; Isabelle Leger-Silvestre; Philipp Milkereit; Joachim Griesenbeck; Herbert Tschochner
Journal:  Nucleic Acids Res       Date:  2010-04-25       Impact factor: 16.971

5.  TOR is a negative regulator of autophagy in Arabidopsis thaliana.

Authors:  Yimo Liu; Diane C Bassham
Journal:  PLoS One       Date:  2010-07-29       Impact factor: 3.240

6.  Knockdown of the Drosophila GTPase nucleostemin 1 impairs large ribosomal subunit biogenesis, cell growth, and midgut precursor cell maintenance.

Authors:  Raphyel Rosby; Zhengfang Cui; Emily Rogers; Megan A deLivron; Victoria L Robinson; Patrick J DiMario
Journal:  Mol Biol Cell       Date:  2009-08-26       Impact factor: 4.138

7.  Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes.

Authors:  Lan Tang; Aarti Sahasranaman; Jelena Jakovljevic; Erica Schleifman; John L Woolford
Journal:  Mol Biol Cell       Date:  2008-04-30       Impact factor: 4.138

8.  Rapamycin inhibits trypanosome cell growth by preventing TOR complex 2 formation.

Authors:  Antonio Barquilla; José L Crespo; Miguel Navarro
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-16       Impact factor: 11.205

9.  A mutant plasma membrane protein is stabilized upon loss of Yvh1, a novel ribosome assembly factor.

Authors:  Yu Liu; Amy Chang
Journal:  Genetics       Date:  2008-12-29       Impact factor: 4.562

10.  Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0.

Authors:  Kai-Yin Lo; Zhihua Li; Feng Wang; Edward M Marcotte; Arlen W Johnson
Journal:  J Cell Biol       Date:  2009-09-21       Impact factor: 10.539

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