Literature DB >> 16879120

Optimisation of forensic genetics procedures used in disputed paternity testing: adjustment of the PCR reaction volume.

Damir Marjanović1, Narcisa Bakal, Lejla Kovacević, Melisa Hodzić, Anja Haverić, Sanin Haverić, Slavica Ibrulj, Adaleta Durmić.   

Abstract

Standard molecular techniques, with only a slight modification, are very useful in obtaining and interpreting the final results in the field of forensic genetic. Data obtained through such analysis are highly reliable and can be used as a very powerful tool that produces valuable results. However, success and swiftness of DNA typing of biological evidence either that found at a crime scene or used in disputed paternity testing, depends on the optimization of numerous factors. One of the most important and critical phases that ensures reliability of the whole procedure is the choice of the most suitable volume for the amplification protocol. Buccal swabs were collected from volunteers. DNA was extracted by Qiagen Dnaeasy Tissue Kit. PowerPlex 16 kit was used to simultaneously amplify 15 STR loci by PCR. Amplification was carried out as described previously. The tested total working reaction volumes were 5, 10 and 25 microl. The PCR amplification was carried out in PE Gene Amp PCR System Thermal Cycler (ABI, Foster City, CA). Amplification products were analyzed on an ABI PRISM 377 instrument (ABI, Foster City, CA) in 5% bis-acrilamide gel. Amplification was generally successful for all the tested reaction volumes. Lower partial to complete DNA profiles ratio, the quality of obtained STR profiles, significantly reduced amount of reaction's components give advantage to 5 microl reaction volume over other two tested volumes in this case.

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Year:  2006        PMID: 16879120      PMCID: PMC7192639          DOI: 10.17305/bjbms.2006.3179

Source DB:  PubMed          Journal:  Bosn J Basic Med Sci        ISSN: 1512-8601            Impact factor:   3.363


  9 in total

1.  The evidential value of STRs. An analysis of exclusion cases.

Authors:  B Brinkmann; H Pfeiffer; M Schürenkamp; C Hohoff
Journal:  Int J Legal Med       Date:  2001       Impact factor: 2.686

Review 2.  Case work guidelines and interpretation of short tandem repeat complex mixture analysis.

Authors:  C S Tomsey; M Kurtz; B Flowers; J Fumea; B Giles; S Kucherer
Journal:  Croat Med J       Date:  2001-06       Impact factor: 1.351

3.  Comparative study of genetic variation at 15 STR loci in three isolated populations of the Bosnian mountain area.

Authors:  D Marjanovic; L Kapur; K Drobnic; B Budowle; N Pojskic; R Hadziselimovic
Journal:  Hum Biol       Date:  2004-02       Impact factor: 0.553

4.  Bosnian population data for the 15 STR loci in the Power Plex 16 kit.

Authors:  R Konjhodzić; M Kubat; J Skavić
Journal:  Int J Legal Med       Date:  2004-02-28       Impact factor: 2.686

5.  Analysis of genetic markers in forensic DNA samples using the polymerase chain reaction.

Authors:  R Reynolds; G Sensabaugh; E Blake
Journal:  Anal Chem       Date:  1991-01-01       Impact factor: 6.986

6.  Allele frequencies for 15 short tandem repeat loci in a representative sample of Bosnians and Herzegovinians.

Authors:  Damir Marjanovic; Narcisa Bakal; Naris Pojskic; Lejla Kapur; Katja Drobnic; Dragan Primorac; Kasim Bajrovic; Rifat Hadziselmovic
Journal:  Forensic Sci Int       Date:  2006-01-06       Impact factor: 2.395

7.  Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction.

Authors:  K B Mullis; F A Faloona
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

8.  Analysis of short tandem repeat (STR) polymorphisms by the powerplex 16 system and capillary electrophoresis: application to forensic practice.

Authors:  Osamu Okamoto; Yuji Yamamoto; Sachiyo Inagaki; Kei Yoshitome; Takaki Ishikawa; Kiyomi Imabayashi; Satoru Miyaishi; Hideo Ishizu
Journal:  Acta Med Okayama       Date:  2003-04       Impact factor: 0.892

9.  Validation and implementation of the PowerPlex 16 BIO System STR multiplex for forensic casework.

Authors:  Susan A Greenspoon; Jeffrey D Ban; Lourdes Pablo; Cecelia A Crouse; Frank G Kist; Chris S Tomsey; Alex L Glessner; Lisa R Mihalacki; Teresa M Long; Bruce J Heidebrecht; Cathryn A Braunstein; David A Freeman; Carl Soberalski; Bruesehoff Nathan; Ashima S Amin; Elizabeth K Douglas; James W Schumm
Journal:  J Forensic Sci       Date:  2004-01       Impact factor: 1.832

  9 in total

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