Literature DB >> 16877707

Nogo goes in the pure water: solution structure of Nogo-60 and design of the structured and buffer-soluble Nogo-54 for enhancing CNS regeneration.

Minfen Li1, Jingxian Liu, Jianxing Song.   

Abstract

The inability to determine the structure of the buffer-insoluble Nogo extracellular domain retarded further design of Nogo receptor (NgR) antagonists to treat CNS axonal injuries. Very surprisingly, we recently discovered that Nogo-60 was soluble and structured in salt-free water, thus allowing the determination of the first Nogo structure by heteronuclear NMR spectroscopy. Nogo-60 adopts an unusual helical structure with the N- and C-terminal helices connected by a long middle helix. While the N-helix has no contact with the rest of the molecule, the C-helix flips back to pack against the 20-residue middle helix. This packing appears to trigger the formation of the stable Nogo-60 structure because Nogo-40 with the last helix truncated is unstructured. The Nogo-60 structure offered us rationales for further design of the structured and buffer-soluble Nogo-54, which may be used as a novel NgR antagonist. Furthermore, our discovery may imply a general solution to solubilizing a category of buffer-insoluble proteins for urgent structural investigations.

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Year:  2006        PMID: 16877707      PMCID: PMC2242580          DOI: 10.1110/ps.062306906

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  29 in total

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Review 2.  Nogo domains and a Nogo receptor: implications for axon regeneration.

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Review 5.  The Nogo-66 receptor: focusing myelin inhibition of axon regeneration.

Authors:  Aaron W McGee; Stephen M Strittmatter
Journal:  Trends Neurosci       Date:  2003-04       Impact factor: 13.837

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

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Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

8.  Structure of the Nogo receptor ectodomain: a recognition module implicated in myelin inhibition.

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Journal:  Neuron       Date:  2003-04-24       Impact factor: 17.173

9.  Identification of a functional epitope of the Nogo receptor by a combinatorial approach using ribosome display.

Authors:  Bernhard Schimmele; Andreas Plückthun
Journal:  J Mol Biol       Date:  2005-09-09       Impact factor: 5.469

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  5 in total

1.  Resurrecting abandoned proteins with pure water: CD and NMR studies of protein fragments solubilized in salt-free water.

Authors:  Minfen Li; Jingxian Liu; Xiaoyuan Ran; Miaoqing Fang; Jiahai Shi; Haina Qin; June-Mui Goh; Jianxing Song
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

2.  Denatured mammalian protein mixtures exhibit unusually high solubility in nucleic acid-free pure water.

Authors:  Junichiro Futami; Haruna Fujiyama; Rie Kinoshita; Hidenori Nonomura; Tomoko Honjo; Hiroko Tada; Hirokazu Matsushita; Yoshito Abe; Kazuhiro Kakimi
Journal:  PLoS One       Date:  2014-11-18       Impact factor: 3.240

3.  Insights into protein aggregation by NMR characterization of insoluble SH3 mutants solubilized in salt-free water.

Authors:  Jingxian Liu; Jianxing Song
Journal:  PLoS One       Date:  2009-11-23       Impact factor: 3.240

Review 4.  The reticulons: a family of proteins with diverse functions.

Authors:  Yvonne S Yang; Stephen M Strittmatter
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

Review 5.  Why do proteins aggregate? "Intrinsically insoluble proteins" and "dark mediators" revealed by studies on "insoluble proteins" solubilized in pure water.

Authors:  Jianxing Song
Journal:  F1000Res       Date:  2013-03-22
  5 in total

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