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Literature DB >> 16874317

TranscriptSNPView: a genome-wide catalog of mouse coding variation.

Fiona Cunningham, Daniel Rios, Mark Griffiths, James Smith, Zemin Ning, Tony Cox, Paul Flicek, Pablo Marin-Garcin, Javier Herrero, Jane Rogers, Louise van der Weyden, Allan Bradley, Ewan Birney, David J Adams.

Abstract

Entities: Species

Mesh：

Year: 2006 PMID： 16874317 PMCID： PMC2610433 DOI： 10.1038/ng0806-853a

Source DB: PubMed Journal: Nat Genet ISSN： 1061-4036 Impact factor: 38.330

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6 in total

1. dbSNP: the NCBI database of genetic variation.

Authors: S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. SSAHA: a fast search method for large DNA databases.

Authors: Z Ning; A J Cox; J C Mullikin
Journal: Genome Res Date: 2001-10 Impact factor: 9.043

3. Free genome databases finally defeat Celera.

Authors: Emma Marris
Journal: Nature Date: 2005-05-05 Impact factor: 49.962

4. Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SNP analysis.

Authors: Kuniya Abe; Hideki Noguchi; Keiko Tagawa; Misako Yuzuriha; Atsushi Toyoda; Toshio Kojima; Kiyoshi Ezawa; Naruya Saitou; Masahira Hattori; Yoshiyuki Sakaki; Kazuo Moriwaki; Toshihiko Shiroishi
Journal: Genome Res Date: 2004-12 Impact factor: 9.043

5. Ensembl 2006.

Authors: E Birney; D Andrews; M Caccamo; Y Chen; L Clarke; G Coates; T Cox; F Cunningham; V Curwen; T Cutts; T Down; R Durbin; X M Fernandez-Suarez; P Flicek; S Gräf; M Hammond; J Herrero; K Howe; V Iyer; K Jekosch; A Kähäri; A Kasprzyk; D Keefe; F Kokocinski; E Kulesha; D London; I Longden; C Melsopp; P Meidl; B Overduin; A Parker; G Proctor; A Prlic; M Rae; D Rios; S Redmond; M Schuster; I Sealy; S Searle; J Severin; G Slater; D Smedley; J Smith; A Stabenau; J Stalker; S Trevanion; A Ureta-Vidal; J Vogel; S White; C Woodwark; T J P Hubbard
Journal: Nucleic Acids Res Date: 2006-01-01 Impact factor: 16.971

6. The Vertebrate Genome Annotation (Vega) database.

Authors: J L Ashurst; C-K Chen; J G R Gilbert; K Jekosch; S Keenan; P Meidl; S M Searle; J Stalker; R Storey; S Trevanion; L Wilming; T Hubbard
Journal: Nucleic Acids Res Date: 2005-01-01 Impact factor: 16.971

6 in total

11 in total

1. A database and API for variation, dense genotyping and resequencing data.

Authors: Daniel Rios; William M McLaren; Yuan Chen; Ewan Birney; Arne Stabenau; Paul Flicek; Fiona Cunningham
Journal: BMC Bioinformatics Date: 2010-05-11 Impact factor: 3.169

2. Ensembl variation resources.

Authors: Yuan Chen; Fiona Cunningham; Daniel Rios; William M McLaren; James Smith; Bethan Pritchard; Giulietta M Spudich; Simon Brent; Eugene Kulesha; Pablo Marin-Garcia; Damian Smedley; Ewan Birney; Paul Flicek
Journal: BMC Genomics Date: 2010-05-11 Impact factor: 3.969

3. Deep congenic analysis identifies many strong, context-dependent QTLs, one of which, Slc35b4, regulates obesity and glucose homeostasis.

Authors: Soha N Yazbek; David A Buchner; Jonathan M Geisinger; Lindsay C Burrage; Sabrina H Spiezio; Gabriel E Zentner; Chang-Wen Hsieh; Peter C Scacheri; Colleen M Croniger; Joseph H Nadeau
Journal: Genome Res Date: 2011-04-19 Impact factor: 9.043

4. What everybody should know about the rat genome and its online resources.

Authors: Simon N Twigger; Kim D Pruitt; Xosé M Fernández-Suárez; Donna Karolchik; Kim C Worley; Donna R Maglott; Garth Brown; George Weinstock; Richard A Gibbs; Jim Kent; Ewan Birney; Howard J Jacob
Journal: Nat Genet Date: 2008-05 Impact factor: 38.330

5. Mouse SNP Miner: an annotated database of mouse functional single nucleotide polymorphisms.

Authors: Eli Reuveni; Vasily E Ramensky; Cornelius Gross
Journal: BMC Genomics Date: 2007-01-21 Impact factor: 3.969

Review 6. Next-generation sequencing of vertebrate experimental organisms.

Authors: Daniel J Turner; Thomas M Keane; Ian Sudbery; David J Adams
Journal: Mamm Genome Date: 2009-05-19 Impact factor: 2.957

7. Loss of Rassf1a cooperates with Apc(Min) to accelerate intestinal tumourigenesis.

Authors: L van der Weyden; M J Arends; O M Dovey; H L Harrison; G Lefebvre; N Conte; F V Gergely; A Bradley; D J Adams
Journal: Oncogene Date: 2008-04-07 Impact factor: 9.867

8. The future of DNA sequence archiving.

Authors: Guy Cochrane; Charles E Cook; Ewan Birney
Journal: Gigascience Date: 2012-07-12 Impact factor: 6.524

9. Ensembl 2009.

Authors: T J P Hubbard; B L Aken; S Ayling; B Ballester; K Beal; E Bragin; S Brent; Y Chen; P Clapham; L Clarke; G Coates; S Fairley; S Fitzgerald; J Fernandez-Banet; L Gordon; S Graf; S Haider; M Hammond; R Holland; K Howe; A Jenkinson; N Johnson; A Kahari; D Keefe; S Keenan; R Kinsella; F Kokocinski; E Kulesha; D Lawson; I Longden; K Megy; P Meidl; B Overduin; A Parker; B Pritchard; D Rios; M Schuster; G Slater; D Smedley; W Spooner; G Spudich; S Trevanion; A Vilella; J Vogel; S White; S Wilder; A Zadissa; E Birney; F Cunningham; V Curwen; R Durbin; X M Fernandez-Suarez; J Herrero; A Kasprzyk; G Proctor; J Smith; S Searle; P Flicek
Journal: Nucleic Acids Res Date: 2008-11-25 Impact factor: 16.971

10. Ensembl 2007.

Authors: T J P Hubbard; B L Aken; K Beal; B Ballester; M Caccamo; Y Chen; L Clarke; G Coates; F Cunningham; T Cutts; T Down; S C Dyer; S Fitzgerald; J Fernandez-Banet; S Graf; S Haider; M Hammond; J Herrero; R Holland; K Howe; K Howe; N Johnson; A Kahari; D Keefe; F Kokocinski; E Kulesha; D Lawson; I Longden; C Melsopp; K Megy; P Meidl; B Ouverdin; A Parker; A Prlic; S Rice; D Rios; M Schuster; I Sealy; J Severin; G Slater; D Smedley; G Spudich; S Trevanion; A Vilella; J Vogel; S White; M Wood; T Cox; V Curwen; R Durbin; X M Fernandez-Suarez; P Flicek; A Kasprzyk; G Proctor; S Searle; J Smith; A Ureta-Vidal; E Birney
Journal: Nucleic Acids Res Date: 2006-12-05 Impact factor: 16.971