Literature DB >> 16872733

A-site model RNAs.

T Hermann1.   

Abstract

Oligonucleotide model systems have played a key role for the exploration of structure, dynamics and ligand binding of the ribosomal decoding-site (A site). An overview is given on the merits and limitations of various A-site models that were used for solution and crystallographic work.

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Year:  2006        PMID: 16872733     DOI: 10.1016/j.biochi.2006.04.020

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  7 in total

1.  Nanopore analysis of individual RNA/antibiotic complexes.

Authors:  Meni Wanunu; Swati Bhattacharya; Yun Xie; Yitzhak Tor; Aleksei Aksimentiev; Marija Drndic
Journal:  ACS Nano       Date:  2011-11-16       Impact factor: 15.881

Review 2.  Domain-elongation NMR spectroscopy yields new insights into RNA dynamics and adaptive recognition.

Authors:  Qi Zhang; Hashim M Al-Hashimi
Journal:  RNA       Date:  2009-09-23       Impact factor: 4.942

3.  Antibiotic selectivity for prokaryotic vs. eukaryotic decoding sites.

Authors:  Yun Xie; Andrew V Dix; Yitzhak Tor
Journal:  Chem Commun (Camb)       Date:  2010-05-13       Impact factor: 6.222

4.  FRET enabled real time detection of RNA-small molecule binding.

Authors:  Yun Xie; Andrew V Dix; Yitzhak Tor
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

5.  A model for the study of ligand binding to the ribosomal RNA helix h44.

Authors:  Sergey M Dibrov; Jerod Parsons; Thomas Hermann
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

6.  Understanding the origins of bacterial resistance to aminoglycosides through molecular dynamics mutational study of the ribosomal A-site.

Authors:  Julia Romanowska; J Andrew McCammon; Joanna Trylska
Journal:  PLoS Comput Biol       Date:  2011-07-21       Impact factor: 4.475

7.  The central role of protein S12 in organizing the structure of the decoding site of the ribosome.

Authors:  Hasan Demirci; Leyi Wang; Frank V Murphy; Eileen L Murphy; Jennifer F Carr; Scott C Blanchard; Gerwald Jogl; Albert E Dahlberg; Steven T Gregory
Journal:  RNA       Date:  2013-10-23       Impact factor: 4.942

  7 in total

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