Literature DB >> 16863127

pKa of acetate in water: a computational study.

Daqing Gao1, Paris Svoronos, Peter K Wong, Deborah Maddalena, Junwoong Hwang, Hughton Walker.   

Abstract

Several computational methods including the conductor-like polarizable continuum model, CPCM with both UAKS and UAHF cavities, Cramer and Truhlar's generalized Born solvation model, SM5.4(AM1), SM5.4(PM3), and SM5.43R(mPW1PW91/6-31+G(d)), and mixed QM/MM-Ewald simulations were used to calculate the pK(a) values of acetate and bicarbonate anions in aqueous solution. This work provided a critical and comprehensive assessment of the quality of these theoretical models in the calculation of aqueous solvation free energies for the singly charged acetate and bicarbonate ions, as well as the doubly charged acetate dianion and carbonate dianion. It was shown that QM/MM-Ewald simulations could give an accurate and consistent evaluation of the pK(a) values of acetate and bicarbonate based on both the relative and absolute pK(a) formulas, while other methods could yield satisfactory results only for certain calculations. However, this does not mean that the current QM/MM-Ewald protocol is superior to other methods. The useful information obtained in this investigation is that both the absolute and relative pK(a) formulas should better be tested in accurate calculations of pK(a) values based on any methods.

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Year:  2005        PMID: 16863127     DOI: 10.1021/jp053996e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Accurate gas phase acidities of carboxylic acids estimated by scaling the vibrational contribution of ab initio Gibbs free energies.

Authors:  Piotr Cysewski
Journal:  J Mol Model       Date:  2007-04-03       Impact factor: 1.810

2.  Mechanism and origins of regio- and enantioselectivities in RhI-catalyzed hydrogenative couplings of 1,3-diynes and activated carbonyl partners: intervention of a cumulene intermediate.

Authors:  Peng Liu; Michael J Krische; Kendall N Houk
Journal:  Chemistry       Date:  2011-03-01       Impact factor: 5.236

3.  Single-ion solvation free energies and the normal hydrogen electrode potential in methanol, acetonitrile, and dimethyl sulfoxide.

Authors:  Casey P Kelly; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2007-01-18       Impact factor: 2.991

4.  Ambient-Potential Composite Ewald Method for ab Initio Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulation.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Theory Comput       Date:  2016-05-26       Impact factor: 6.006

5.  How to Predict the pK a of Any Compound in Any Solvent.

Authors:  Michael Busch; Ernst Ahlberg; Elisabet Ahlberg; Kari Laasonen
Journal:  ACS Omega       Date:  2022-05-09

6.  Adding explicit solvent molecules to continuum solvent calculations for the calculation of aqueous acid dissociation constants.

Authors:  Casey P Kelly; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2006-02-23       Impact factor: 2.781

7.  5-Fluorouracil-Complete Insight into Its Neutral and Ionised Forms.

Authors:  Justyna Wielińska; Andrzej Nowacki; Beata Liberek
Journal:  Molecules       Date:  2019-10-13       Impact factor: 4.411

8.  Prediction of protein pK a with representation learning.

Authors:  Hatice Gokcan; Olexandr Isayev
Journal:  Chem Sci       Date:  2022-02-01       Impact factor: 9.825

  8 in total

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