Literature DB >> 16480309

Adding explicit solvent molecules to continuum solvent calculations for the calculation of aqueous acid dissociation constants.

Casey P Kelly1, Christopher J Cramer, Donald G Truhlar.   

Abstract

Aqueous acid dissociation free energies for a diverse set of 57 monoprotic acids have been calculated using a combination of experimental and calculated gas and liquid-phase free energies. For ionic species, aqueous solvation free energies were calculated using the recently developed SM6 continuum solvation model. This model combines a dielectric continuum with atomic surface tensions to account for bulk solvent effects. For some of the acids studied, a combined approach that involves attaching a single explicit water molecule to the conjugate base (anion), and then surrounding the resulting anion-water cluster by a dielectric continuum, significantly improves the agreement between the calculated pK(a) value and experiment. This suggests that for some anions, particularly those concentrating charge on a single exposed heteroatom, augmenting implicit solvent calculations with a single explicit water molecule is required, and adequate, to account for strong short-range hydrogen bonding interactions between the anion and the solvent. We also demonstrate the effect of adding several explicit waters by calculating the pK(a) of bicarbonate (HCO(3)(-)) using as the conjugate base carbonate (CO(3)(2-)) bound by up to three explicit water molecules.

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Year:  2006        PMID: 16480309      PMCID: PMC2528253          DOI: 10.1021/jp055336f

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  19 in total

1.  Accurate pK(a) calculations for carboxylic acids using complete basis set and Gaussian-n models combined with CPCM continuum solvation methods.

Authors:  M D Liptak; G C Shields
Journal:  J Am Chem Soc       Date:  2001-08-01       Impact factor: 15.419

2.  Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics.

Authors:  Christopher J. Cramer; Donald G. Truhlar
Journal:  Chem Rev       Date:  1999-08-11       Impact factor: 60.622

3.  Accurate pKa determination for a heterogeneous group of organic molecules.

Authors:  Marcel Schmidt am Busch; Ernst-Walter Knapp
Journal:  Chemphyschem       Date:  2004-10-18       Impact factor: 3.102

4.  Quantum mechanical continuum solvation models.

Authors:  Jacopo Tomasi; Benedetta Mennucci; Roberto Cammi
Journal:  Chem Rev       Date:  2005-08       Impact factor: 60.622

5.  Theoretical study of hydrogen-bonded complexes of chlorophenols with water or ammonia: Correlations and predictions of pKa values.

Authors:  Jun Han; Richard L Deming; Fu-Ming Tao
Journal:  J Phys Chem A       Date:  2005-02-17       Impact factor: 2.781

6.  Absolute pK(a) determinations for substituted phenols.

Authors:  Matthew D Liptak; Kevin C Gross; Paul G Seybold; Steven Feldgus; George C Shields
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

7.  Theoretical evaluation of pK(a) in phosphoranes: implications for phosphate ester hydrolysis.

Authors:  Xabier Lopez; Michael Schaefer; Annick Dejaegere; Martin Karplus
Journal:  J Am Chem Soc       Date:  2002-05-08       Impact factor: 15.419

8.  Estimating pKa values for pentaoxyphosphoranes.

Authors:  J E Davies; N L Doltsinis; A J Kirby; C D Roussev; M Sprik
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

9.  First-principle predictions of absolute pKa's of organic acids in dimethyl sulfoxide solution.

Authors:  Yao Fu; Lei Liu; Rui-Qiong Li; Rui Liu; Qing-Xiang Guo
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

10.  Proton binding to proteins: pK(a) calculations with explicit and implicit solvent models.

Authors:  Thomas Simonson; Jens Carlsson; David A Case
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

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  28 in total

1.  Prediction of SAMPL2 aqueous solvation free energies and tautomeric ratios using the SM8, SM8AD, and SMD solvation models.

Authors:  Raphael F Ribeiro; Aleksandr V Marenich; Christopher J Cramer; Donald G Truhlar
Journal:  J Comput Aided Mol Des       Date:  2010-04-01       Impact factor: 3.686

2.  DelPhi Web Server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes.

Authors:  Subhra Sarkar; Shawn Witham; Jie Zhang; Maxim Zhenirovskyy; Walter Rocchia; Emil Alexov
Journal:  Commun Comput Phys       Date:  2013-01       Impact factor: 3.246

3.  Force-field and quantum-mechanical binding study of selected SAMPL3 host-guest complexes.

Authors:  Nobuko Hamaguchi; Laszlo Fusti-Molnar; Stanislaw Wlodek
Journal:  J Comput Aided Mol Des       Date:  2012-02-25       Impact factor: 3.686

4.  Understanding arsenate reaction kinetics with ferric hydroxides.

Authors:  James Farrell; Binod K Chaudhary
Journal:  Environ Sci Technol       Date:  2013-07-10       Impact factor: 9.028

5.  Microsolvation and hydration enthalpies of CaS2O3(H2O)(n) (n = 0-19) and S2O3(2-)(H2O)(n) (n = 0-16): an ab initio study.

Authors:  Victor M Rosas-García; Isabel del Carmen Sáenz-Tavera; María del Rosario Rojas-Unda
Journal:  J Mol Model       Date:  2015-03-28       Impact factor: 1.810

6.  Single-ion solvation free energies and the normal hydrogen electrode potential in methanol, acetonitrile, and dimethyl sulfoxide.

Authors:  Casey P Kelly; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2007-01-18       Impact factor: 2.991

7.  The SAMPL5 challenge for embedded-cluster integral equation theory: solvation free energies, aqueous pK a, and cyclohexane-water log D.

Authors:  Nicolas Tielker; Daniel Tomazic; Jochen Heil; Thomas Kloss; Sebastian Ehrhart; Stefan Güssregen; K Friedemann Schmidt; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2016-08-23       Impact factor: 3.686

8.  Free-radical scavenging by tryptophan and its metabolites through electron transfer based processes.

Authors:  Adriana Pérez-González; Juan Raúl Alvarez-Idaboy; Annia Galano
Journal:  J Mol Model       Date:  2015-07-30       Impact factor: 1.810

9.  Hyperconjugation-mediated solvent effects in phosphoanhydride bonds.

Authors:  Jean C Summerton; Jeffrey D Evanseck; Michael S Chapman
Journal:  J Phys Chem A       Date:  2012-10-09       Impact factor: 2.781

10.  Explicitly representing the solvation shell in continuum solvent calculations.

Authors:  Eirik F da Silva; Hallvard F Svendsen; Kenneth M Merz
Journal:  J Phys Chem A       Date:  2009-06-04       Impact factor: 2.781

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