Literature DB >> 16853859

Structural character and energetics of tyrosyl radical formation by electron/proton transfers of a covalently linked histidine-tyrosine: a model for cytochrome C oxidase.

Yuxiang Bu1, R I Cukier.   

Abstract

The structural, energetic, and electronic and IR spectroscopic properties for a model of the cross-linked histidine-tyrosine (His-Tyr) residues as found in cytochrome c oxidase (CcO) are investigated by ab initio methods. The formation of a His-Tyr radical is studied by two paths: proton release followed by electron release and vice versa. The energetics for the proton/electron releases of the Tyr depend modestly on the cross-linked His substituent and, more sensitively, on the charge of the cation attached to the imino N site of the His residue. Protonation of the imino N site significantly increases the electron ionization potential and decreases the proton dissociation energy, making them competitive processes. A positive charge placed at the imino N site, whose value is scanned from zero to one, shows a continuous increase in ionization potential and a decrease in proton dissociation energy, with the +1 limit agreeing well with the protonated imino N site result, indicating a dominant electrostatic effect. The charge populations and the spin density distributions of the His-Tyr model, the radical cation formed by electron ionization, the anion formed by proton dissociation, and the final His-Tyr radical depend sensitively on the substituents, implying a modulation role on the charge transfer between the phenol and imidazole rings, especially for the charged species. His-Tyr and protonated His-Tyr exhibit differences among their respective structural isomers with consequences on their IR absorptions. Small barriers between their pseudo-cis and pseudo-trans rotamers demonstrate the relative flexibility between the two rings, and these may facilitate proton release and charge transfer. The cation effect demonstrates that the cationized cross-linked His-Tyr should be the best candidate to mimic the covalently ring-linked histidine-tyrosine structure in CcO.

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Year:  2005        PMID: 16853859     DOI: 10.1021/jp053046t

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

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Authors:  James Hemp; Dana E Robinson; Krithika B Ganesan; Todd J Martinez; Neil L Kelleher; Robert B Gennis
Journal:  Biochemistry       Date:  2006-12-19       Impact factor: 3.162

Review 2.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

3.  Identification of a histidine-tyrosine cross-link in the active site of the cbb3-type cytochrome c oxidase from Rhodobacter sphaeroides.

Authors:  Virve Rauhamäki; Marc Baumann; Rabah Soliymani; Anne Puustinen; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

4.  Mutagenesis of tyrosine residues within helix VII in subunit I of the cytochrome cbb₃ oxidase from Rhodobacter capsulatus.

Authors:  Mehmet Oztürk; Nicholas J Watmough
Journal:  Mol Biol Rep       Date:  2010-11-24       Impact factor: 2.316

5.  A spectroscopic investigation of a tridentate Cu-complex mimicking the tyrosine-histidine cross-link of cytochrome C oxidase.

Authors:  Adam Offenbacher; Kimberly N White; Indranil Sen; Allen G Oliver; Joseph P Konopelski; Bridgette A Barry; Olöf Einarsdóttir
Journal:  J Phys Chem B       Date:  2009-05-21       Impact factor: 2.991

6.  A chemically explicit model for the mechanism of proton pumping in heme-copper oxidases.

Authors:  Martyn A Sharpe; Shelagh Ferguson-Miller
Journal:  J Bioenerg Biomembr       Date:  2008-10-01       Impact factor: 2.945

  6 in total

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