Literature DB >> 16853395

Mapping atomistic simulations to mesoscopic models: a systematic coarse-graining procedure for vinyl polymer chains.

Giuseppe Milano1, Florian Müller-Plathe.   

Abstract

The paper introduces a systematic procedure to coarse-grain atomistic models of the largest family of synthetic polymers into a mesoscopic model that is able to keep detailed information about chain stereosequences. The mesoscopic model consists of sequences of superatoms centered on methylene carbons of two different types according to the kind of diad (m or r) they belong to. The corresponding force-field contains three different bonds, six angle and three nonbonded terms. Recently developed analytical potentials, based on sums of Gaussians for bond and angle terms of the mesoscale force field have been used. For the nonbonded part, numerical potentials optimized by pressure-corrected iterative Boltzmann inversion have been used. As test case we coarse-grained an atomistic all-atom model of atactic polystyrene. The proposed mesoscale model has been successfully tested against structural and dynamical properties for different chain lengths and opens the possibility of relaxing melts of high molecular weight vinyl polymers.

Entities:  

Year:  2005        PMID: 16853395     DOI: 10.1021/jp0523571

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  13 in total

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2.  Development of a coarse-grained water forcefield via multistate iterative Boltzmann inversion.

Authors:  Timothy C Moore; Christopher R Iacovella; Clare McCabe
Journal:  Found Mol Model Simul (2015)       Date:  2016-06-02

3.  Glassy worm-like micelles in solvent and shear mediated shape transitions.

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Journal:  Soft Matter       Date:  2018-05-23       Impact factor: 3.679

4.  A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). I. General theory and model.

Authors:  Jaehyeok Jin; Yining Han; Alexander J Pak; Gregory A Voth
Journal:  J Chem Phys       Date:  2021-01-28       Impact factor: 3.488

5.  Molecular dynamics simulations of creatine kinase and adenine nucleotide translocase in mitochondrial membrane patch.

Authors:  Jaanus Karo; Pearu Peterson; Marko Vendelin
Journal:  J Biol Chem       Date:  2012-01-12       Impact factor: 5.157

6.  Implicit-solvent dissipative particle dynamics force field based on a four-to-one coarse-grained mapping scheme.

Authors:  Mingwei Wan; Lianghui Gao; Weihai Fang
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

7.  Extensive CGMD Simulations of Atactic PS Providing Pseudo Experimental Data to Calibrate Nonlinear Inelastic Continuum Mechanical Constitutive Laws.

Authors:  Maximilian Ries; Gunnar Possart; Paul Steinmann; Sebastian Pfaller
Journal:  Polymers (Basel)       Date:  2019-11-06       Impact factor: 4.329

8.  Multiscale Molecular Simulations of Polymer-Matrix Nanocomposites: or What Molecular Simulations Have Taught us About the Fascinating Nanoworld.

Authors:  Georgios G Vogiatzis; Doros N Theodorou
Journal:  Arch Comput Methods Eng       Date:  2017-02-22       Impact factor: 7.302

9.  Mechanism of Inhibition of Human Islet Amyloid Polypeptide-Induced Membrane Damage by a Small Organic Fluorogen.

Authors:  Xiaoxu Li; Mingwei Wan; Lianghui Gao; Weihai Fang
Journal:  Sci Rep       Date:  2016-02-18       Impact factor: 4.379

10.  Dissipative Particle Dynamics Simulations for Phospholipid Membranes Based on a Four-To-One Coarse-Grained Mapping Scheme.

Authors:  Xiaoxu Li; Lianghui Gao; Weihai Fang
Journal:  PLoS One       Date:  2016-05-03       Impact factor: 3.240

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