Literature DB >> 16853158

Ultrafast dynamics of myoglobin without the distal histidine: stimulated vibrational echo experiments and molecular dynamics simulations.

Ilya J Finkelstein1, Anne Goj, Brian L McClain, Aaron M Massari, Kusai A Merchant, Roger F Loring, M D Fayer.   

Abstract

Ultrafast protein dynamics of the CO adduct of a myoglobin mutant with the polar distal histidine replaced by a nonpolar valine (H64V) have been investigated by spectrally resolved infrared stimulated vibrational echo experiments and molecular dynamics (MD) simulations. In aqueous solution at room temperature, the vibrational dephasing rate of CO in the mutant is reduced by approximately 50% relative to the native protein. This finding confirms that the dephasing of the CO vibration in the native protein is sensitive to the interaction between the ligand and the distal histidine. The stimulated vibrational echo observable is calculated from MD simulations of H64V within a model in which vibrational dephasing is driven by electrostatic forces. In agreement with experiment, calculated vibrational echoes show slower dephasing for the mutant than for the native protein. However, vibrational echoes calculated for H64V do not show the quantitative agreement with measurements demonstrated previously for the native protein.

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Year:  2005        PMID: 16853158     DOI: 10.1021/jp0517201

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  21 in total

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5.  Dynamics of proteins encapsulated in silica sol-gel glasses studied with IR vibrational echo spectroscopy.

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Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

6.  Influence of histidine tag attachment on picosecond protein dynamics.

Authors:  Megan C Thielges; Jean K Chung; Jun Y Axup; Michael D Fayer
Journal:  Biochemistry       Date:  2011-06-06       Impact factor: 3.162

7.  Protein dynamics in cytochrome P450 molecular recognition and substrate specificity using 2D IR vibrational echo spectroscopy.

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8.  Enhanced vibrational solvatochromism and spectral diffusion by electron rich substituents on small molecule silanes.

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Review 9.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

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Journal:  Top Curr Chem       Date:  2013

10.  Fast dynamics of HP35 for folded and urea-unfolded conditions.

Authors:  Jean K Chung; Megan C Thielges; Stephen R Lynch; Michael D Fayer
Journal:  J Phys Chem B       Date:  2012-08-29       Impact factor: 2.991

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