Literature DB >> 16852923

Engineering a beta-sheet protein toward the folding speed limit.

Houbi Nguyen, Marcus Jäger, Jeffery W Kelly, Martin Gruebele.   

Abstract

Recent experimental studies have shown that alpha-helical proteins can approach the folding "speed limit", where folding switches from an activated to a downhill process in free energy. beta-sheet proteins are generally thought to fold more slowly than helix bundles. However, based on studies of hairpins, folding should still be able to approach the microsecond time scale. Here we demonstrate how the hPin1 WW domain, a triple-stranded beta-sheet protein with a sharp thermodynamic melting transition, can be engineered toward the folding "speed limit" without a significant loss in thermal denaturation cooperativity.

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Year:  2005        PMID: 16852923     DOI: 10.1021/jp052373y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  32 in total

1.  Tackling force-field bias in protein folding simulations: folding of Villin HP35 and Pin WW domains in explicit water.

Authors:  Jeetain Mittal; Robert B Best
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

2.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

3.  Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*.

Authors:  Charles Dumont; Yoshitaka Matsumura; Seung Joong Kim; Jinsong Li; Elena Kondrashkina; Hiroshi Kihara; Martin Gruebele
Journal:  Protein Sci       Date:  2006-11       Impact factor: 6.725

4.  Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece.

Authors:  Daniel L Ensign; Peter M Kasson; Vijay S Pande
Journal:  J Mol Biol       Date:  2007-09-29       Impact factor: 5.469

5.  Ten-microsecond molecular dynamics simulation of a fast-folding WW domain.

Authors:  Peter L Freddolino; Feng Liu; Martin Gruebele; Klaus Schulten
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

6.  An experimental survey of the transition between two-state and downhill protein folding scenarios.

Authors:  Feng Liu; Deguo Du; Amelia A Fuller; Jennifer E Davoren; Peter Wipf; Jeffery W Kelly; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

7.  Force field bias in protein folding simulations.

Authors:  Peter L Freddolino; Sanghyun Park; Benoît Roux; Klaus Schulten
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

8.  Probing the origins of two-state folding.

Authors:  Thomas J Lane; Christian R Schwantes; Kyle A Beauchamp; Vijay S Pande
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

9.  Evaluating beta-turn mimics as beta-sheet folding nucleators.

Authors:  Amelia A Fuller; Deguo Du; Feng Liu; Jennifer E Davoren; Gira Bhabha; Gerard Kroon; David A Case; H Jane Dyson; Evan T Powers; Peter Wipf; Martin Gruebele; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

10.  Mutational effects on the folding dynamics of a minimized hairpin.

Authors:  Michele Scian; Irene Shu; Katherine A Olsen; Khalil Hassam; Niels H Andersen
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

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