Literature DB >> 16849597

Why molecular chaperones buffer mutational damage: a case study with a yeast Hsp40/70 system.

Joanna Bobula1, Katarzyna Tomala, Elzbieta Jez, Dominika M Wloch, Rhona H Borts, Ryszard Korona.   

Abstract

The malfunctioning of molecular chaperones may result in uncovering genetic variation. The molecular basis of this phenomenon remains largely unknown. Chaperones rescue proteins unfolded by environmental stresses and therefore they might also help to stabilize mutated proteins and thus mask damages. To test this hypothesis, we carried out a genomewide mutagenesis followed by a screen for mutations that were synthetically harmful when the RAC-Ssb1/2 cytosolic chaperones were inactive. Mutants with such a phenotype were found and mapped to single nucleotide substitutions. However, neither the genes identified nor the nature of genetic lesions implied that folding of the mutated proteins was being supported by the chaperones. In a second screen, we identified temperature-sensitive (ts) mutants, a phenotype indicative of structural instability of proteins. We tested these for an association with sensitivity to loss of chaperone activity but found no such correlation as might have been expected if the chaperones assisted the folding of mutant proteins. Thus, molecular chaperones can mask the negative effects of mutations but the mechanism of such buffering need not be direct. A plausible role of chaperones is to stabilize genetic networks, thus making them more tolerant to malfunctioning of their constituents.

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Year:  2006        PMID: 16849597      PMCID: PMC1602100          DOI: 10.1534/genetics.106.061564

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  64 in total

1.  Essential Bacillus subtilis genes.

Authors:  K Kobayashi; S D Ehrlich; A Albertini; G Amati; K K Andersen; M Arnaud; K Asai; S Ashikaga; S Aymerich; P Bessieres; F Boland; S C Brignell; S Bron; K Bunai; J Chapuis; L C Christiansen; A Danchin; M Débarbouille; E Dervyn; E Deuerling; K Devine; S K Devine; O Dreesen; J Errington; S Fillinger; S J Foster; Y Fujita; A Galizzi; R Gardan; C Eschevins; T Fukushima; K Haga; C R Harwood; M Hecker; D Hosoya; M F Hullo; H Kakeshita; D Karamata; Y Kasahara; F Kawamura; K Koga; P Koski; R Kuwana; D Imamura; M Ishimaru; S Ishikawa; I Ishio; D Le Coq; A Masson; C Mauël; R Meima; R P Mellado; A Moir; S Moriya; E Nagakawa; H Nanamiya; S Nakai; P Nygaard; M Ogura; T Ohanan; M O'Reilly; M O'Rourke; Z Pragai; H M Pooley; G Rapoport; J P Rawlins; L A Rivas; C Rivolta; A Sadaie; Y Sadaie; M Sarvas; T Sato; H H Saxild; E Scanlan; W Schumann; J F M L Seegers; J Sekiguchi; A Sekowska; S J Séror; M Simon; P Stragier; R Studer; H Takamatsu; T Tanaka; M Takeuchi; H B Thomaides; V Vagner; J M van Dijl; K Watabe; A Wipat; H Yamamoto; M Yamamoto; Y Yamamoto; K Yamane; K Yata; K Yoshida; H Yoshikawa; U Zuber; N Ogasawara
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-07       Impact factor: 11.205

2.  TRiC/CCT cooperates with different upstream chaperones in the folding of distinct protein classes.

Authors:  Katja Siegers; Bettina Bölter; Juliane P Schwarz; Ulrike M K Böttcher; Suranjana Guha; F Ulrich Hartl
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

Review 3.  Perspective: Evolution and detection of genetic robustness.

Authors:  J Arjan G M de Visser; Joachim Hermisson; Günter P Wagner; Lauren Ancel Meyers; Homayoun Bagheri-Chaichian; Jeffrey L Blanchard; Lin Chao; James M Cheverud; Santiago F Elena; Walter Fontana; Greg Gibson; Thomas F Hansen; David Krakauer; Richard C Lewontin; Charles Ofria; Sean H Rice; George von Dassow; Andreas Wagner; Michael C Whitlock
Journal:  Evolution       Date:  2003-09       Impact factor: 3.694

4.  Global mapping of the yeast genetic interaction network.

Authors:  Amy Hin Yan Tong; Guillaume Lesage; Gary D Bader; Huiming Ding; Hong Xu; Xiaofeng Xin; James Young; Gabriel F Berriz; Renee L Brost; Michael Chang; YiQun Chen; Xin Cheng; Gordon Chua; Helena Friesen; Debra S Goldberg; Jennifer Haynes; Christine Humphries; Grace He; Shamiza Hussein; Lizhu Ke; Nevan Krogan; Zhijian Li; Joshua N Levinson; Hong Lu; Patrice Ménard; Christella Munyana; Ainslie B Parsons; Owen Ryan; Raffi Tonikian; Tania Roberts; Anne-Marie Sdicu; Jesse Shapiro; Bilal Sheikh; Bernhard Suter; Sharyl L Wong; Lan V Zhang; Hongwei Zhu; Christopher G Burd; Sean Munro; Chris Sander; Jasper Rine; Jack Greenblatt; Matthias Peter; Anthony Bretscher; Graham Bell; Frederick P Roth; Grant W Brown; Brenda Andrews; Howard Bussey; Charles Boone
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

Review 5.  Protein degradation and protection against misfolded or damaged proteins.

Authors:  Alfred L Goldberg
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

Review 6.  Under cover: causes, effects and implications of Hsp90-mediated genetic capacitance.

Authors:  Todd A Sangster; Susan Lindquist; Christine Queitsch
Journal:  Bioessays       Date:  2004-04       Impact factor: 4.345

7.  Low temperature or GroEL/ES overproduction permits growth of Escherichia coli cells lacking trigger factor and DnaK.

Authors:  S Vorderwülbecke; G Kramer; F Merz; T A Kurz; T Rauch; B Zachmann-Brand; B Bukau; E Deuerling
Journal:  FEBS Lett       Date:  2004-02-13       Impact factor: 4.124

Review 8.  Molecular chaperones and protein quality control.

Authors:  Bernd Bukau; Jonathan Weissman; Arthur Horwich
Journal:  Cell       Date:  2006-05-05       Impact factor: 41.582

9.  Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.

Authors:  S Y Gerdes; M D Scholle; J W Campbell; G Balázsi; E Ravasz; M D Daugherty; A L Somera; N C Kyrpides; I Anderson; M S Gelfand; A Bhattacharya; V Kapatral; M D'Souza; M V Baev; Y Grechkin; F Mseeh; M Y Fonstein; R Overbeek; A-L Barabási; Z N Oltvai; A L Osterman
Journal:  J Bacteriol       Date:  2003-10       Impact factor: 3.490

10.  In vivo analysis of the overlapping functions of DnaK and trigger factor.

Authors:  Pierre Genevaux; France Keppel; Françoise Schwager; Petra S Langendijk-Genevaux; F Ulrich Hartl; Costa Georgopoulos
Journal:  EMBO Rep       Date:  2004-01-09       Impact factor: 8.807

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  8 in total

1.  Predicting mutation outcome from early stochastic variation in genetic interaction partners.

Authors:  Alejandro Burga; M Olivia Casanueva; Ben Lehner
Journal:  Nature       Date:  2011-12-07       Impact factor: 49.962

2.  Chaperonin overexpression promotes genetic variation and enzyme evolution.

Authors:  Nobuhiko Tokuriki; Dan S Tawfik
Journal:  Nature       Date:  2009-06-04       Impact factor: 49.962

3.  Alleviation of deleterious effects of protein mutation through inactivation of molecular chaperones.

Authors:  Katarzyna Tomala; Ryszard Korona
Journal:  Mol Genet Genomics       Date:  2008-09-02       Impact factor: 3.291

4.  A ribosome-anchored chaperone network that facilitates eukaryotic ribosome biogenesis.

Authors:  Véronique Albanèse; Stefanie Reissmann; Judith Frydman
Journal:  J Cell Biol       Date:  2010-04-05       Impact factor: 10.539

Review 5.  Sociobiology of the budding yeast.

Authors:  Dominika M Wloch-Salamon
Journal:  J Biosci       Date:  2014-04       Impact factor: 1.826

6.  Power provides protection: Genetic robustness in yeast depends on the capacity to generate energy.

Authors:  Marcin Plech; Katarzyna Tomala; Hanna Tutaj; Dominika Ewa Piwcewicz; J Arjan G M de Visser; Ryszard Korona
Journal:  PLoS Genet       Date:  2017-05-11       Impact factor: 5.917

Review 7.  Molecular chaperones and selection against mutations.

Authors:  Katarzyna Tomala; Ryszard Korona
Journal:  Biol Direct       Date:  2008-02-26       Impact factor: 4.540

8.  Network hubs buffer environmental variation in Saccharomyces cerevisiae.

Authors:  Sasha F Levy; Mark L Siegal
Journal:  PLoS Biol       Date:  2008-11-04       Impact factor: 8.029

  8 in total

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