Literature DB >> 16837192

Model systems for beta-hairpins and beta-sheets.

Robert M Hughes1, Marcey L Waters.   

Abstract

beta-Sheets and alpha-helices are the two principal secondary structures in proteins. However, our understanding of beta-sheet structure lags behind that of alpha-helices, largely because, until recently, there was no model system to study the beta-sheet secondary structure in isolation. With the development of well-folded beta-hairpins, this is changing rapidly. Recent advances include: increased understanding of the relative contributions of turn, strand and sidechain interactions to beta-hairpin and beta-sheet stability, with the role of aromatic residues as a common subtheme; experimental and theoretical kinetic and thermodynamic studies of beta-hairpin and beta-sheet folding; de novo protein design, including all-beta structures, mixed alpha/beta motifs and switchable systems; and the creation of functional beta-hairpins.

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Year:  2006        PMID: 16837192     DOI: 10.1016/j.sbi.2006.06.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

1.  Protein beta-sheet nucleation is driven by local modular formation.

Authors:  Brent Wathen; Zongchao Jia
Journal:  J Biol Chem       Date:  2010-04-10       Impact factor: 5.157

2.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

3.  Light-triggered beta-hairpin folding and unfolding.

Authors:  Tobias E Schrader; Wolfgang J Schreier; Thorben Cordes; Florian O Koller; Galina Babitzki; Robert Denschlag; Christian Renner; Markus Löweneck; Shou-Liang Dong; Luis Moroder; Paul Tavan; Wolfgang Zinth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-24       Impact factor: 11.205

Review 4.  Roles of beta-turns in protein folding: from peptide models to protein engineering.

Authors:  Anna Marie C Marcelino; Lila M Gierasch
Journal:  Biopolymers       Date:  2008-05       Impact factor: 2.505

5.  Impact of strand length on the stability of parallel-β-sheet secondary structure.

Authors:  Felix Freire; Aaron M Almeida; John D Fisk; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2011-08-02       Impact factor: 15.336

6.  Aromatic cluster mutations produce focal modulations of β-sheet structure.

Authors:  Matthew Biancalana; Koki Makabe; Shude Yan; Shohei Koide
Journal:  Protein Sci       Date:  2015-03-25       Impact factor: 6.725

7.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

8.  Folding mechanisms of individual beta-hairpins in a Go model of Pin1 WW domain by all-atom molecular dynamics simulations.

Authors:  Zhonglin Luo; Jiandong Ding; Yaoqi Zhou
Journal:  J Chem Phys       Date:  2008-06-14       Impact factor: 3.488

9.  Structures of single-layer β-sheet proteins evolved from β-hairpin repeats.

Authors:  Qingping Xu; Matthew Biancalana; Joanna C Grant; Hsiu-Ju Chiu; Lukasz Jaroszewski; Mark W Knuth; Scott A Lesley; Adam Godzik; Marc-André Elsliger; Ashley M Deacon; Ian A Wilson
Journal:  Protein Sci       Date:  2019-08-02       Impact factor: 6.725

10.  Aromatic stacking between nucleobase and enzyme promotes phosphate ester hydrolysis in dUTPase.

Authors:  Ildiko Pecsi; Ibolya Leveles; Veronika Harmat; Beata G Vertessy; Judit Toth
Journal:  Nucleic Acids Res       Date:  2010-07-02       Impact factor: 16.971

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