Literature DB >> 16834008

Structure, spectroscopy, and spectral tuning of the gas-phase retinal chromophore: the beta-ionone "handle" and alkyl group effect.

Alessandro Cembran1, Remedios Gonzalez-Luque, Piero Altoè, Manuela Merchan, Fernando Bernardi, Massimo Olivucci, Marco Garavelli.   

Abstract

The low-lying singlet states (i.e. S0, S1, and S2) of the chromophore of rhodopsin, the protonated Schiff base of 11-cis-retinal (PSB11), and of its all-trans photoproduct have been studied in isolated conditions by using ab initio multiconfigurational second-order perturbation theory. The computed spectroscopic features include the vertical excitation, the band origin, and the fluorescence maximum of both isomers. On the basis of the S0-->S1 vertical excitation, the gas-phase absorption maximum of PSB11 is predicted to be 545 nm (2.28 eV). Thus, the predicted absorption maximum appears to be closer to that of the rhodopsin pigment (2.48 eV) and considerably red-shifted with respect to that measured in solution (2.82 eV in methanol). In addition, the absorption maxima associated with the blue, green, and red cone visual pigments are tentatively rationalized in terms of the spectral changes computed for PSB11 structures featuring differently twisted beta-ionone rings. More specifically, a blue-shifted absorption maximum is explained in terms of a large twisting of the beta-ionone ring (with respect to the main conjugated chain) in the visual S-cone (blue) pigment chromophore. In contrast, the chromophore of the visual L-cone (red) pigment is expected to have a nearly coplanar beta-ionone ring yielding a six double bond fully conjugated framework. Finally, the M-cone (green) chromophore is expected to feature a twisting angle between 10 and 60 degrees. The spectroscopic effects of the alkyl substituents on the PSB11 spectroscopic properties have also been investigated. It is found that they have a not negligible stabilizing effect on the S1-S0 energy gap (and, thus, cause a red shift of the absorption maximum) only when the double bond of the beta-ionone ring conjugates significantly with the rest of the conjugated chain.

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Year:  2005        PMID: 16834008     DOI: 10.1021/jp052068c

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  15 in total

1.  Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.

Authors:  Piero Altoè; Alessandro Cembran; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

2.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

3.  First steps of retinal photoisomerization in proteorhodopsin.

Authors:  Martin O Lenz; Robert Huber; Bernhard Schmidt; Peter Gilch; Rolf Kalmbach; Martin Engelhard; Josef Wachtveitl
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

4.  The color of rhodopsins at the ab initio multiconfigurational perturbation theory resolution.

Authors:  Pedro B Coto; Angela Strambi; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-07       Impact factor: 11.205

Review 5.  Quantum mechanical/molecular mechanical studies on spectral tuning mechanisms of visual pigments and other photoactive proteins.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  Photochem Photobiol       Date:  2008-03-07       Impact factor: 3.421

6.  A blue-shifted light-driven proton pump for neural silencing.

Authors:  Yuki Sudo; Ayako Okazaki; Hikaru Ono; Jin Yagasaki; Seiya Sugo; Motoshi Kamiya; Louisa Reissig; Keiichi Inoue; Kunio Ihara; Hideki Kandori; Shin Takagi; Shigehiko Hayashi
Journal:  J Biol Chem       Date:  2013-05-28       Impact factor: 5.157

7.  Color Tuning in rhodopsins: the origin of the spectral shift between the chloride-bound and anion-free forms of halorhodopsin.

Authors:  Mikhail N Ryazantsev; Ahmet Altun; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2012-03-16       Impact factor: 15.419

8.  The molecular structure of a curl-shaped retinal isomer.

Authors:  Robert Send; Dage Sundholm
Journal:  J Mol Model       Date:  2008-03-20       Impact factor: 1.810

9.  Color tuning in short wavelength-sensitive human and mouse visual pigments: ab initio quantum mechanics/molecular mechanics studies.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

10.  Spectral tuning in visual pigments: an ONIOM(QM:MM) study on bovine rhodopsin and its mutants.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem B       Date:  2008-05-13       Impact factor: 2.991

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