Literature DB >> 16833572

Detailed ab initio studies of the conformers and conformational distributions of gaseous tryptophan.

Zhijian Huang1, Zijing Lin.   

Abstract

A systematic and extensive conformational search has been performed to characterize the gas-phase tryptophan structures. A total of 648 unique trial structures were generated by allowing for all combinations of internal single-bond rotamers and were optimized at the DFT/B3LYP/6-311G* level of theory. A total of 45 local minima conformers were found. Further optimization of the 45 conformers with B3LYP and MP2/6-311++G** did not produce meaningful structural change, and accurate geometries, dipole moments, rotational constants, harmonic frequencies, and relative energies were then determined. Combined with statistical mechanics principles, the conformational distributions of gas-phase tryptophan at different temperatures are shown. The results clearly support the conclusion drawn by Compagnon et al. that only one dominant isomer existed in the molecular beam at 85 K and add further evidence that the supersonic jet expansion or embedding helium droplets did not produce an equilibrium distribution.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16833572     DOI: 10.1021/jp0461201

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  9 in total

1.  DFT studies on the intrinsic conformational properties of non-ionic pyrrolysine in gas phase.

Authors:  Gunajyoti Das; Shilpi Mandal
Journal:  J Mol Model       Date:  2013-01-08       Impact factor: 1.810

2.  Structure of dipeptides having N-terminal selenocysteine residues: a DFT study in gas and aqueous phase.

Authors:  Shilpi Mandal; Gunajyoti Das
Journal:  J Mol Model       Date:  2013-03-15       Impact factor: 1.810

3.  Comprehensive conformational studies of five tripeptides and a deduced method for efficient determinations of peptide structures.

Authors:  Wenbo Yu; Zhiqing Wu; Huibin Chen; Xu Liu; Alexander D MacKerell; Zijing Lin
Journal:  J Phys Chem B       Date:  2012-02-10       Impact factor: 2.991

4.  Theoretical study of the NLO responses of some natural and unnatural amino acids used as probe molecules.

Authors:  S N Derrar; M Sekkal-Rahal; P Derreumaux; M Springborg
Journal:  J Mol Model       Date:  2014-08-05       Impact factor: 1.810

5.  Investigations of dipeptide structures containing pyrrolysine as N-terminal residues: a DFT study in gas and aqueous phase.

Authors:  Gunajyoti Das
Journal:  J Mol Model       Date:  2013-01-19       Impact factor: 1.810

6.  Zwitterionic conformers of pyrrolysine and their interactions with metal ions--a theoretical study.

Authors:  Gunajyoti Das
Journal:  J Mol Model       Date:  2013-04-07       Impact factor: 1.810

7.  Nearest-neighbor interactions and their influence on the structural aspects of dipeptides.

Authors:  Gunajyoti Das; Shilpi Mandal
Journal:  Biochem Res Int       Date:  2013-09-18

8.  Efficient Amino Acid Conformer Search with Bayesian Optimization.

Authors:  Lincan Fang; Esko Makkonen; Milica Todorović; Patrick Rinke; Xi Chen
Journal:  J Chem Theory Comput       Date:  2021-02-12       Impact factor: 6.006

9.  TorsiFlex: an automatic generator of torsional conformers. Application to the twenty proteinogenic amino acids.

Authors:  David Ferro-Costas; Irea Mosquera-Lois; Antonio Fernández-Ramos
Journal:  J Cheminform       Date:  2021-12-24       Impact factor: 8.489

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.